Found 1 of 1 query genes

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Query interactions

Interaction partners
Confidence
Network
MEX
PIN
SCL
PHP
MIR
TFB
PEX
GIN
DOM
QMS
GRG
Evidence types
HSA
MMU
RNO
CFA
GGA
DRE
CIN
DME
CEL
BTA
SCE
ATH
SPO
BSU
ECO
PFA
DDI
SSO
SSC
MJA
OSA
Species
In Gold st.

ID Query gene
ID Query ortholog

Log-likelihood ratio (LLR)
	Highly positive
	Positive
	Zero
	Negative
	Highly negative
Known coupling
	This network
	Other network

2. ENSG00000153187
3. heterogeneous nuclear r…
- 2. YBX1
  3. Y-box binding protein 1
  4. 1.000
  5. PPI
- 2. DHX9
  3. DExH-box helicase 9
  4. 1.000
  5. PPI
- 2. HNRNPH3
  3. heterogeneous nuclear r…
  4. 1.000
  5. PPI
- 2. RPS6
  3. ribosomal protein S6
  4. 1.000
  5. Complex
- 2. NCL
  3. nucleolin
  4. 1.000
  5. PPI
- 2. CTNNB1
  3. catenin beta 1
  4. 1.000
  5. PPI
- 2. TUBA1C
  3. tubulin alpha 1c
  4. 1.000
  5. Complex
- 2. STAU1
  3. staufen double-stranded…
  4. 1.000
  5. PPI
- 2. GTF2F1
  3. general transcription f…
  4. 1.000
  5. PPI
- 2. TIAL1
  3. TIA1 cytotoxic granule …
  4. 1.000
  5. PPI
- 2. BAZ1B
  3. bromodomain adjacent to…
  4. 1.000
  5. PPI
- 2. PPP2R1A
  3. protein phosphatase 2 s…
  4. 0.999
  5. PPI
- 2. RPS3A
  3. ribosomal protein S3A
  4. 0.999
  5. Complex
- 2. TIA1
  3. TIA1 cytotoxic granule …
  4. 0.999
  5. PPI
- 2. EED
  3. embryonic ectoderm deve…
  4. 0.999
  5. Complex
- 2. RPS8
  3. ribosomal protein S8
  4. 0.999
  5. Complex
- 2. WBP4
  3. WW domain binding prote…
  4. 0.999
  5. PPI
- 2. SYNCRIP
  3. synaptotagmin binding c…
  4. 0.999
  5. PPI
- 2. CENPW
  3. centromere protein W
  4. 0.999
  5. PPI
- 2. HNRNPA0
  3. heterogeneous nuclear r…
  4. 0.999
  5. PPI
- 2. SREK1
  3. splicing regulatory glu…
  4. 0.999
  5. PPI
- 2. ELAVL1
  3. ELAV like RNA binding p…
  4. 0.999
  5. PPI
- 2. SND1
  3. staphylococcal nuclease…
  4. 0.999
  5. PPI
- 2. RPL6
  3. ribosomal protein L6
  4. 0.999
  5. Complex
- 2. RTRAF
  3. RNA transcription, tran…
  4. 0.999
  5. PPI
- 2. RAN
  3. RAN, member RAS oncogen…
  4. 0.999
  5. PPI
- 2. RFC1
  3. replication factor C su…
  4. 0.999
  5. PPI
- 2. HNRNPAB
  3. heterogeneous nuclear r…
  4. 0.999
  5. PPI
- 2. RFC3
  3. replication factor C su…
  4. 0.999
  5. PPI
- 2. NAT10
  3. N-acetyltransferase 10
  4. 0.999
  5. PPI

Subnetwork gene interactions

ENSG00000153187

heterogeneous nuclear ribonucleoprotein U

FunCoup

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Ensembl

ENSG00000153187

UniProt

NCBI

3192

CTNNB1

catenin beta 1

FunCoup

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Ensembl

ENSG00000168036

UniProt

NCBI

1499

NCL

nucleolin

FunCoup

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Ensembl

ENSG00000115053

UniProt

NCBI

4691

STAU1

staufen double-stranded RNA binding protein 1

FunCoup

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Ensembl

ENSG00000124214

UniProt

NCBI

6780

RPL6

ribosomal protein L6

FunCoup

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Ensembl

ENSG00000089009

UniProt

NCBI

6128

SREK1

splicing regulatory glutamic acid and lysine rich protein 1

FunCoup

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Ensembl

ENSG00000153914

UniProt

NCBI

140890

TIA1

TIA1 cytotoxic granule associated RNA binding protein

FunCoup

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Ensembl

ENSG00000116001

UniProt

NCBI

7072

PPP2R1A

protein phosphatase 2 scaffold subunit Aalpha

FunCoup

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Ensembl

ENSG00000105568

UniProt

NCBI

5518

EED

embryonic ectoderm development

FunCoup

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Ensembl

ENSG00000074266

UniProt

NCBI

8726

SND1

staphylococcal nuclease and tudor domain containing 1

FunCoup

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Ensembl

ENSG00000197157

UniProt

NCBI

27044

YBX1

Y-box binding protein 1

FunCoup

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Ensembl

ENSG00000065978

UniProt

NCBI

4904

RAN

RAN, member RAS oncogene family

FunCoup

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Ensembl

ENSG00000132341

UniProt

NCBI

5901

HNRNPAB

heterogeneous nuclear ribonucleoprotein A/B

FunCoup

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Ensembl

ENSG00000197451

UniProt

NCBI

3182

RPS3A

ribosomal protein S3A

FunCoup

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Ensembl

ENSG00000145425

UniProt

NCBI

6189

ELAVL1

ELAV like RNA binding protein 1

FunCoup

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Ensembl

ENSG00000066044

UniProt

NCBI

1994

TIAL1

TIA1 cytotoxic granule associated RNA binding protein like 1

FunCoup

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Ensembl

ENSG00000151923

UniProt

NCBI

7073

HNRNPA0

heterogeneous nuclear ribonucleoprotein A0

FunCoup

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Ensembl

ENSG00000177733

UniProt

Q13151

NCBI

10949

NAT10

N-acetyltransferase 10

FunCoup

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Ensembl

ENSG00000135372

UniProt

NCBI

55226

RFC3

replication factor C subunit 3

FunCoup

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Ensembl

ENSG00000133119

UniProt

NCBI

5983

SYNCRIP

synaptotagmin binding cytoplasmic RNA interacting protein

FunCoup

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Ensembl

ENSG00000135316

UniProt

NCBI

10492

RPS8

ribosomal protein S8

FunCoup

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Ensembl

ENSG00000142937

UniProt

NCBI

6202

DHX9

DExH-box helicase 9

FunCoup

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Ensembl

ENSG00000135829

UniProt

Q08211

NCBI

1660

RPS6

ribosomal protein S6

FunCoup

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Ensembl

ENSG00000137154

UniProt

NCBI

6194

HNRNPH3

heterogeneous nuclear ribonucleoprotein H3

FunCoup

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Ensembl

ENSG00000096746

UniProt

P31942

NCBI

3189

TUBA1C

tubulin alpha 1c

FunCoup

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Ensembl

ENSG00000167553

UniProt

NCBI

84790

GTF2F1

general transcription factor IIF subunit 1

FunCoup

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Ensembl

ENSG00000125651

UniProt

NCBI

2962

RFC1

replication factor C subunit 1

FunCoup

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Ensembl

ENSG00000035928

UniProt

NCBI

5981

RTRAF

RNA transcription, translation and transport factor

FunCoup

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Ensembl

ENSG00000087302

UniProt

NCBI

51637

BAZ1B

bromodomain adjacent to zinc finger domain 1B

FunCoup

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Ensembl

ENSG00000009954

UniProt

Q9UIG0

NCBI

9031

CENPW

centromere protein W

FunCoup

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Ensembl

ENSG00000203760

UniProt

NCBI

387103

WBP4

WW domain binding protein 4

FunCoup

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Ensembl

ENSG00000120688

UniProt

O75554

NCBI

11193

Query genes

		Identifier	Description
30	ENSG00000153187	ENSG00000153187	heterogeneous nuclear ribonucleoprotein U
		UniProt	A0A087WVI9 A0A087WZF3 A0A1W2PNG3 A0A1W2PP22 A0A1W2PP34 A0A1W2PP35 A0A1W2PPE9 A0A1W2PPH7 A0A1W2PPL4 A0A1W2PPS1 A0A1W2PQ74 A0A1W2PQD4 A0A1W2PQL0 A0A1W2PRI6 A0A1W2PRZ7 A0A1X7SBS1 Q00839 Q5RI18
		NCBI	3192
		KEGG metabolic	Spliceosome

Subnetwork genes

		Identifier	Description
15	CTNNB1	ENSG00000168036	catenin beta 1
		UniProt	A0A2R8Y543 A0A2R8Y5A3 A0A2R8Y5C3 A0A2R8Y5Z1 A0A2R8Y6G0 A0A2R8Y750 A0A2R8Y7Z0 A0A2R8Y804 A0A2R8Y815 A0A2R8YCH5 A0A2R8YG06 B4DGU4 C9IZ65 P35222
		NCBI	1499
		KEGG signaling	Rap1 signaling pathway Focal adhesion Adherens junction Wnt signaling pathway Thyroid hormone signaling pathway Leukocyte transendothelial migration Melanogenesis Hippo signaling pathway
27	NCL	ENSG00000115053	nucleolin
		UniProt	C9J1H7 C9JLB1 C9JWL1 C9JYW2 H7BY16 P19338
		NCBI	4691
18	STAU1	ENSG00000124214	staufen double-stranded RNA binding protein 1
		UniProt	A0A087X1A5 F6UDC6 O95793 Q5JW28 Q5JW30
		NCBI	6780
22	RPL6	ENSG00000089009	ribosomal protein L6
		UniProt	F8VR69 F8VU16 F8VWR1 F8VZ45 F8VZA3 Q02878 U3KQR5
		NCBI	6128
		KEGG metabolic	Ribosome
12	SREK1	ENSG00000153914	splicing regulatory glutamic acid and lysine rich protein 1
		UniProt	A0A087WY03 E5RFV3 E5RJ76 E5RK30 H0YC47 Q8WXA9
		NCBI	140890
11	TIA1	ENSG00000116001	TIA1 cytotoxic granule associated RNA binding protein
		UniProt	C9JTN7 E5RG67 E5RGV5 F8W8I6 F8WE16 H7BY49 P31483
		NCBI	7072
18	PPP2R1A	ENSG00000105568	protein phosphatase 2 scaffold subunit Aalpha
		UniProt	B3KQV6 C9J9C1 E9PH38 M0QXG4 M0R0K6 P30153
		NCBI	5518
		KEGG signaling	Oocyte meiosis Long-term depression Tight junction TGF-beta signaling pathway AMPK signaling pathway Dopaminergic synapse PI3K-Akt signaling pathway Adrenergic signaling in cardiomyocytes Hippo signaling pathway Sphingolipid signaling pathway
		KEGG metabolic	mRNA surveillance pathway
27	EED	ENSG00000074266	embryonic ectoderm development
		UniProt	A0A5F9ZI63 E9PJK2 E9PMU3 H0YEL4 O75530
		NCBI	8726
18	SND1	ENSG00000197157	staphylococcal nuclease and tudor domain containing 1
		UniProt	H7C597 Q7KZF4
		NCBI	27044
25	YBX1	ENSG00000065978	Y-box binding protein 1
		UniProt	C9J5V9 H0Y449 P67809
		NCBI	4904
28	RAN	ENSG00000132341	RAN, member RAS oncogene family
		UniProt	A0A087X0W0 B4DV51 B5MDF5 F5H018 H0YFC6 J3KQE5 P62826
		NCBI	5901
		KEGG metabolic	Ribosome biogenesis in eukaryotes RNA transport
24	HNRNPAB	ENSG00000197451	heterogeneous nuclear ribonucleoprotein A/B
		UniProt	D6R9P3 D6RBZ0 D6RD18 Q99729
		NCBI	3182
21	RPS3A	ENSG00000145425	ribosomal protein S3A
		UniProt	D6R9B6 D6RAS7 D6RAT0 D6RB09 D6RED7 D6RG13 D6RGE0 D6RI02 E9PFI5 H0Y8L7 H0Y9Y4 P61247
		NCBI	6189
		KEGG metabolic	Ribosome
20	ELAVL1	ENSG00000066044	ELAV like RNA binding protein 1
		UniProt	M0QZR9 M0R055 Q15717
		NCBI	1994
		KEGG signaling	AMPK signaling pathway IL-17 signaling pathway
19	TIAL1	ENSG00000151923	TIA1 cytotoxic granule associated RNA binding protein like 1
		UniProt	A0A087WX93 A6NKZ9 E7ETC0 E7ETJ9 Q01085
		NCBI	7073
22	HNRNPA0	ENSG00000177733	heterogeneous nuclear ribonucleoprotein A0
		UniProt	Q13151
		NCBI	10949
24	NAT10	ENSG00000135372	N-acetyltransferase 10
		UniProt	A0A087WV29 E9PJN6 E9PMU0 Q9H0A0
		NCBI	55226
		KEGG metabolic	Ribosome biogenesis in eukaryotes
19	RFC3	ENSG00000133119	replication factor C subunit 3
		UniProt	A0A087X270 P40938
		NCBI	5983
		KEGG metabolic	DNA replication Mismatch repair Nucleotide excision repair
18	SYNCRIP	ENSG00000135316	synaptotagmin binding cytoplasmic RNA interacting protein
		UniProt	B7Z645 F6UXX1 O60506
		NCBI	10492
23	RPS8	ENSG00000142937	ribosomal protein S8
		UniProt	P62241 Q5JR95
		NCBI	6202
		KEGG metabolic	Ribosome
25	DHX9	ENSG00000135829	DExH-box helicase 9
		UniProt	Q08211
		NCBI	1660
21	RPS6	ENSG00000137154	ribosomal protein S6
		UniProt	A2A3R5 A2A3R7 P62753
		NCBI	6194
		KEGG signaling	HIF-1 signaling pathway PI3K-Akt signaling pathway Apelin signaling pathway mTOR signaling pathway Insulin signaling pathway
		KEGG metabolic	Ribosome
13	HNRNPH3	ENSG00000096746	heterogeneous nuclear ribonucleoprotein H3
		UniProt	P31942
		NCBI	3189
22	TUBA1C	ENSG00000167553	tubulin alpha 1c
		UniProt	A0A1W2PQM2 F5H5D3 F8VRK1 F8VS66 H0YHV2 Q9BQE3
		NCBI	84790
		KEGG signaling	Tight junction Apoptosis Gap junction
		KEGG metabolic	Phagosome
6	GTF2F1	ENSG00000125651	general transcription factor IIF subunit 1
		UniProt	M0QXD6 M0R0R9 M0R0Z3 P35269
		NCBI	2962
		KEGG metabolic	Basal transcription factors
21	RFC1	ENSG00000035928	replication factor C subunit 1
		UniProt	A0A1W2PP02 D6RAD2 E0CX09 H0Y8U4 H0Y9P8 P35251
		NCBI	5981
		KEGG metabolic	DNA replication Mismatch repair Nucleotide excision repair
15	RTRAF	ENSG00000087302	RNA transcription, translation and transport factor
		UniProt	G3V4C6 G3V4E7 H0YJB9 Q9Y224
		NCBI	51637
7	BAZ1B	ENSG00000009954	bromodomain adjacent to zinc finger domain 1B
		UniProt	Q9UIG0
		NCBI	9031
3	CENPW	ENSG00000203760	centromere protein W
		UniProt	A0A0A0MRK5 Q5EE01
		NCBI	387103
2	WBP4	ENSG00000120688	WW domain binding protein 4
		UniProt	O75554
		NCBI	11193

Enrichment analysis

Search for enrichment of pathways or functional gene sets for your subnetwork genes

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	jSquid_subnetworks.xml	309.58 KB
	H.sapiens_subnetwork.tsv	50.71 KB

Species:

Network information:

Filter Results:

Network appearance:

ENSG00000153187

CTNNB1

NCL

STAU1

RPL6

SREK1

TIA1

PPP2R1A

EED

SND1

YBX1

RAN

HNRNPAB

RPS3A

ELAVL1

TIAL1

HNRNPA0

NAT10

RFC3

SYNCRIP

RPS8

DHX9

RPS6

HNRNPH3

TUBA1C

GTF2F1

RFC1

RTRAF

BAZ1B

CENPW

WBP4

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