Found 1 of 1 query genes

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Query interactions

Interaction partners
Confidence
Network
MEX
PIN
SCL
PHP
MIR
TFB
PEX
GIN
DOM
QMS
GRG
Evidence types
HSA
MMU
RNO
CFA
GGA
DRE
CIN
DME
CEL
BTA
SCE
ATH
SPO
BSU
ECO
PFA
DDI
SSO
SSC
MJA
OSA
Species
In Gold st.

ID Query gene
ID Query ortholog

Log-likelihood ratio (LLR)
	Highly positive
	Positive
	Zero
	Negative
	Highly negative
Known coupling
	This network
	Other network

2. ENSG00000148835
3. TATA-box binding protei…
- 2. TBP
  3. TATA-box binding protein
  4. 1.000
  5. PPI
- 2. TAF1
  3. TATA-box binding protei…
  4. 1.000
  5. PPI
- 2. TRRAP
  3. transformation/transcri…
  4. 1.000
  5. PPI
- 2. TAF7
  3. TATA-box binding protei…
  4. 1.000
  5. PPI
- 2. TAF8
  3. TATA-box binding protei…
  4. 1.000
  5. PPI
- 2. TAF6
  3. TATA-box binding protei…
  4. 1.000
  5. PPI
- 2. TAF2
  3. TATA-box binding protei…
  4. 1.000
  5. PPI
- 2. TAF9
  3. TATA-box binding protei…
  4. 1.000
  5. PPI
- 2. TAF4
  3. TATA-box binding protei…
  4. 1.000
  5. PPI
- 2. TAF13
  3. TATA-box binding protei…
  4. 1.000
  5. PPI
- 2. GTF2F2
  3. general transcription f…
  4. 1.000
  5. PPI
- 2. GTF2A1
  3. general transcription f…
  4. 1.000
  5. PPI
- 2. UBE2I
  3. ubiquitin conjugating e…
  4. 1.000
  5. PPI
- 2. TAF10
  3. TATA-box binding protei…
  4. 1.000
  5. PPI
- 2. TAF11
  3. TATA-box binding protei…
  4. 1.000
  5. PPI
- 2. TAF1L
  3. TATA-box binding protei…
  4. 1.000
  5. PPI
- 2. SUPT3H
  3. SPT3 homolog, SAGA and …
  4. 1.000
  5. PPI
- 2. RUVBL2
  3. RuvB like AAA ATPase 2
  4. 1.000
  5. PPI
- 2. POLR2C
  3. RNA polymerase II subun…
  4. 1.000
  5. PPI
- 2. USP22
  3. ubiquitin specific pept…
  4. 1.000
  5. PPI
- 2. KAT2A
  3. lysine acetyltransferas…
  4. 1.000
  5. Complex
- 2. TAF12
  3. TATA-box binding protei…
  4. 1.000
  5. PPI
- 2. RUVBL1
  3. RuvB like AAA ATPase 1
  4. 1.000
  5. PPI
- 2. CPSF1
  3. cleavage and polyadenyl…
  4. 1.000
  5. PPI
- 2. CDK7
  3. cyclin dependent kinase…
  4. 1.000
  5. PPI
- 2. TAF9B
  3. TATA-box binding protei…
  4. 1.000
  5. PPI
- 2. ERCC3
  3. ERCC excision repair 3,…
  4. 1.000
  5. PPI
- 2. TBPL2
  3. TATA-box binding protei…
  4. 1.000
  5. PPI
- 2. GTF2B
  3. general transcription f…
  4. 1.000
  5. PPI
- 2. SMARCA4
  3. SWI/SNF related, matrix…
  4. 1.000
  5. Metabolic

Subnetwork gene interactions

ENSG00000148835

TATA-box binding protein associated factor 5

FunCoup

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Ensembl

ENSG00000148835

UniProt

Q15542

NCBI

6877

RUVBL1

RuvB like AAA ATPase 1

FunCoup

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Ensembl

ENSG00000175792

UniProt

NCBI

8607

USP22

ubiquitin specific peptidase 22

FunCoup

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Ensembl

ENSG00000124422

UniProt

NCBI

23326

SMARCA4

SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 4

FunCoup

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Ensembl

ENSG00000127616

UniProt

NCBI

6597

KAT2A

lysine acetyltransferase 2A

FunCoup

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Ensembl

ENSG00000108773

UniProt

NCBI

2648

CPSF1

cleavage and polyadenylation specific factor 1

FunCoup

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Ensembl

ENSG00000071894

UniProt

NCBI

29894

TRRAP

transformation/transcription domain associated protein

FunCoup

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Ensembl

ENSG00000196367

UniProt

NCBI

8295

RUVBL2

RuvB like AAA ATPase 2

FunCoup

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Ensembl

ENSG00000183207

UniProt

NCBI

10856

TAF9B

TATA-box binding protein associated factor 9b

FunCoup

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Ensembl

ENSG00000187325

UniProt

Q9HBM6

NCBI

51616

TAF2

TATA-box binding protein associated factor 2

FunCoup

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Ensembl

ENSG00000064313

UniProt

NCBI

6873

POLR2C

RNA polymerase II subunit C

FunCoup

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Ensembl

ENSG00000102978

UniProt

NCBI

5432

TAF10

TATA-box binding protein associated factor 10

FunCoup

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Ensembl

ENSG00000166337

UniProt

NCBI

6881

TAF6

TATA-box binding protein associated factor 6

FunCoup

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Ensembl

ENSG00000106290

UniProt

NCBI

6878

TBP

TATA-box binding protein

FunCoup

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Ensembl

ENSG00000112592

UniProt

NCBI

6908

UBE2I

ubiquitin conjugating enzyme E2 I

FunCoup

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Ensembl

ENSG00000103275

UniProt

NCBI

7329

TAF1

TATA-box binding protein associated factor 1

FunCoup

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Ensembl

ENSG00000147133

UniProt

NCBI

6872

TAF4

TATA-box binding protein associated factor 4

FunCoup

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Ensembl

ENSG00000130699

UniProt

NCBI

6874

GTF2F2

general transcription factor IIF subunit 2

FunCoup

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Ensembl

ENSG00000188342

UniProt

P13984

NCBI

2963

TAF12

TATA-box binding protein associated factor 12

FunCoup

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Ensembl

ENSG00000120656

UniProt

Q16514

NCBI

6883

SUPT3H

SPT3 homolog, SAGA and STAGA complex component

FunCoup

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Ensembl

ENSG00000196284

UniProt

NCBI

8464

TAF11

TATA-box binding protein associated factor 11

FunCoup

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Ensembl

ENSG00000064995

UniProt

NCBI

6882

GTF2B

general transcription factor IIB

FunCoup

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Ensembl

ENSG00000137947

UniProt

NCBI

2959

TBPL2

TATA-box binding protein like 2

FunCoup

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Ensembl

ENSG00000182521

UniProt

NCBI

387332

GTF2A1

general transcription factor IIA subunit 1

FunCoup

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Ensembl

ENSG00000165417

UniProt

NCBI

2957

TAF1L

TATA-box binding protein associated factor 1 like

FunCoup

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Ensembl

ENSG00000122728

UniProt

Q8IZX4

NCBI

138474

TAF13

TATA-box binding protein associated factor 13

FunCoup

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Ensembl

ENSG00000197780

UniProt

Q15543

NCBI

6884

TAF9

TATA-box binding protein associated factor 9

FunCoup

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Ensembl

ENSG00000273841

UniProt

NCBI

6880

CDK7

cyclin dependent kinase 7

FunCoup

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Ensembl

ENSG00000134058

UniProt

NCBI

1022

ERCC3

ERCC excision repair 3, TFIIH core complex helicase subunit

FunCoup

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Ensembl

ENSG00000163161

UniProt

NCBI

2071

TAF8

TATA-box binding protein associated factor 8

FunCoup

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Ensembl

ENSG00000137413

UniProt

NCBI

129685

TAF7

TATA-box binding protein associated factor 7

FunCoup

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Ensembl

ENSG00000178913

UniProt

NCBI

6879

Query genes

		Identifier	Description
30	ENSG00000148835	ENSG00000148835	TATA-box binding protein associated factor 5
		UniProt	Q15542
		NCBI	6877
		KEGG metabolic	Basal transcription factors

Subnetwork genes

		Identifier	Description
29	RUVBL1	ENSG00000175792	RuvB like AAA ATPase 1
		UniProt	E7ETR0 H7C4G5 H7C4I3 J3QLR1 Q9Y265
		NCBI	8607
		KEGG signaling	Wnt signaling pathway
20	USP22	ENSG00000124422	ubiquitin specific peptidase 22
		UniProt	J3QRV6 J3QS30 K7ERX6 K7ESK0 Q9UPT9
		NCBI	23326
25	SMARCA4	ENSG00000127616	SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 4
		UniProt	A0A0A0MT49 A0A2R8Y440 A0A2R8Y4C5 A0A2R8Y4P4 A0A2R8Y4R6 A0A2R8Y523 A0A2R8Y526 A0A2R8Y583 A0A2R8Y5K3 A0A2R8Y6N0 A0A2R8Y6V2 A0A2R8Y7F3 A0A2R8Y7R0 A0A2R8Y7S2 A0A2R8Y7Y7 A0A2R8Y866 A0A2R8YCY3 A0A2R8YDA1 A0A2R8YF38 A0A2R8YF58 A0A2R8YF80 A0A2R8YFK5 A0A2R8YFV8 A0A2R8YG32 A0A2R8YGG3 A0A2R8YGP5 K7EP28 K7EQF0 P51532 Q9HBD4
		NCBI	6597
29	KAT2A	ENSG00000108773	lysine acetyltransferase 2A
		UniProt	K7EPC4 K7ERS6 Q92830
		NCBI	2648
		KEGG signaling	Thyroid hormone signaling pathway Notch signaling pathway
13	CPSF1	ENSG00000071894	cleavage and polyadenylation specific factor 1
		UniProt	A0A087WTV4 A0A087X101 E9PIM1 Q10570
		NCBI	29894
		KEGG metabolic	mRNA surveillance pathway
30	TRRAP	ENSG00000196367	transformation/transcription domain associated protein
		UniProt	A0A2R8YFJ4 C9K0N1 F2Z2U4 H0Y4W2 Q9Y4A5
		NCBI	8295
28	RUVBL2	ENSG00000183207	RuvB like AAA ATPase 2
		UniProt	A0A1W2PS22 A0A1W2PS48 M0QXI6 M0QXZ7 M0QYD8 M0R0Y3 M0R0Z0 Q9Y230 X6R2L4
		NCBI	10856
29	TAF9B	ENSG00000187325	TATA-box binding protein associated factor 9b
		UniProt	Q9HBM6
		NCBI	51616
		KEGG metabolic	Basal transcription factors
29	TAF2	ENSG00000064313	TATA-box binding protein associated factor 2
		UniProt	E5RI28 H0YB55 H0YC37 H0YEX2 Q6P1X5
		NCBI	6873
		KEGG metabolic	Basal transcription factors
28	POLR2C	ENSG00000102978	RNA polymerase II subunit C
		UniProt	H3BRR2 P19387
		NCBI	5432
		KEGG metabolic	RNA polymerase
24	TAF10	ENSG00000166337	TATA-box binding protein associated factor 10
		UniProt	A0A087WWP5 Q12962
		NCBI	6881
		KEGG metabolic	Basal transcription factors
29	TAF6	ENSG00000106290	TATA-box binding protein associated factor 6
		UniProt	A0A1D5RMS5 C9J088 C9J7C4 C9JFL8 C9JHQ8 C9JI39 C9JIS2 C9JTY6 E5RHA1 E5RKA5 F8WEJ7 J3KR72 P49848
		NCBI	6878
		KEGG metabolic	Basal transcription factors
30	TBP	ENSG00000112592	TATA-box binding protein
		UniProt	A0A1B0GVC6 H0Y6D8 P20226 Q32MN6 Q7Z6S4 Q7Z6S5
		NCBI	6908
		KEGG metabolic	Basal transcription factors
19	UBE2I	ENSG00000103275	ubiquitin conjugating enzyme E2 I
		UniProt	B0QYN7 H3BPC4 H3BQQ9 H3BRD1 P63279
		NCBI	7329
		KEGG signaling	NF-kappa B signaling pathway
		KEGG metabolic	Ubiquitin mediated proteolysis RNA transport
28	TAF1	ENSG00000147133	TATA-box binding protein associated factor 1
		UniProt	H0Y8N6 H0Y9L7 H7BY98 H7C2K9 P21675
		NCBI	6872
		KEGG metabolic	Basal transcription factors
27	TAF4	ENSG00000130699	TATA-box binding protein associated factor 4
		UniProt	O00268 V9GY03 V9GY14
		NCBI	6874
		KEGG metabolic	Basal transcription factors
26	GTF2F2	ENSG00000188342	general transcription factor IIF subunit 2
		UniProt	P13984
		NCBI	2963
		KEGG metabolic	Basal transcription factors
27	TAF12	ENSG00000120656	TATA-box binding protein associated factor 12
		UniProt	Q16514
		NCBI	6883
		KEGG metabolic	Basal transcription factors
25	SUPT3H	ENSG00000196284	SPT3 homolog, SAGA and STAGA complex component
		UniProt	B4E1H0 O75486 Q5VWT9
		NCBI	8464
25	TAF11	ENSG00000064995	TATA-box binding protein associated factor 11
		UniProt	A0A3B3ITY8 Q15544
		NCBI	6882
		KEGG metabolic	Basal transcription factors
28	GTF2B	ENSG00000137947	general transcription factor IIB
		UniProt	B1APE1 B1APE2 Q00403
		NCBI	2959
		KEGG metabolic	Basal transcription factors
20	TBPL2	ENSG00000182521	TATA-box binding protein like 2
		UniProt	G3V454 Q6SJ96
		NCBI	387332
		KEGG metabolic	Basal transcription factors
30	GTF2A1	ENSG00000165417	general transcription factor IIA subunit 1
		UniProt	J3KNC0 P52655
		NCBI	2957
		KEGG metabolic	Basal transcription factors
23	TAF1L	ENSG00000122728	TATA-box binding protein associated factor 1 like
		UniProt	Q8IZX4
		NCBI	138474
		KEGG metabolic	Basal transcription factors
28	TAF13	ENSG00000197780	TATA-box binding protein associated factor 13
		UniProt	Q15543
		NCBI	6884
		KEGG metabolic	Basal transcription factors
28	TAF9	ENSG00000273841	TATA-box binding protein associated factor 9
		UniProt	D6RGK3 D6RHW1 D6RIE8 D6RIV9 D6RIY1 Q16594
		NCBI	6880
		KEGG metabolic	Basal transcription factors
26	CDK7	ENSG00000134058	cyclin dependent kinase 7
		UniProt	D6R9G1 D6R9Z2 D6RAD4 D6REC6 D6RF14 D6RFL0 D6RGG9 D6RI01 D6RIG9 P50613
		NCBI	1022
		KEGG signaling	Cell cycle
		KEGG metabolic	Basal transcription factors Nucleotide excision repair
29	ERCC3	ENSG00000163161	ERCC excision repair 3, TFIIH core complex helicase subunit
		UniProt	A0A2R8Y4R8 A0A2R8Y5H0 A0A2R8Y5L2 A0A2R8Y681 A0A2R8Y6W8 A0A2R8Y762 A0A2R8YES7 A0A2R8YFS3 F2Z2V4 H7C309 P19447
		NCBI	2071
		KEGG metabolic	Basal transcription factors Nucleotide excision repair
22	TAF8	ENSG00000137413	TATA-box binding protein associated factor 8
		UniProt	A0A0A0MRR3 B4DZU5 C9J7M8 C9J856 Q7Z7C8
		NCBI	129685
		KEGG metabolic	Basal transcription factors
28	TAF7	ENSG00000178913	TATA-box binding protein associated factor 7
		UniProt	A0A096LPC3 Q15545
		NCBI	6879
		KEGG metabolic	Basal transcription factors

Enrichment analysis

Search for enrichment of pathways or functional gene sets for your subnetwork genes

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	jSquid_subnetworks.xml	312.84 KB
	H.sapiens_subnetwork.tsv	70.94 KB

Species:

Network information:

Filter Results:

Network appearance:

ENSG00000148835

RUVBL1

USP22

SMARCA4

KAT2A

CPSF1

TRRAP

RUVBL2

TAF9B

TAF2

POLR2C

TAF10

TAF6

TBP

UBE2I

TAF1

TAF4

GTF2F2

TAF12

SUPT3H

TAF11

GTF2B

TBPL2

GTF2A1

TAF1L

TAF13

TAF9

CDK7

ERCC3

TAF8

TAF7

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