- Interaction partners
- Confidence
- Network
- Evidence types
- SpeciesHSAMMURNOCFAGGADRECINDMECELBTASCEATHSPOBSUECOPFADDISSOSSCMJAOSA
- In Gold st.
- ID Query gene
- ID Query ortholog
Log-likelihood ratio (LLR) | |
---|---|
Highly positive | |
Positive | |
Zero | |
Negative | |
Highly negative | |
Known coupling | |
This network | |
Other network |
-
- ENSG00000101138
- cleavage stimulation fa…
- CSTF2T
- cleavage stimulation fa…
- 1.000
- PPI
- BARD1
- BRCA1 associated RING d…
- 1.000
- PPI
- PCNA
- proliferating cell nucl…
- 1.000
- PPI
- CSTF2
- cleavage stimulation fa…
- 0.999
- Metabolic
- GTF2E2
- general transcription f…
- 0.999
- PPI
- CPSF2
- cleavage and polyadenyl…
- 0.998
- PPI
- POLR2A
- RNA polymerase II subun…
- 0.997
- PPI
- VCP
- valosin containing prot…
- 0.995
- PPI
- HNRNPA1
- heterogeneous nuclear r…
- 0.992
- PPI
- SUPT16H
- SPT16 homolog, facilita…
- 0.989
- Metabolic
- H2AC20
- H2A clustered histone 20
- 0.986
- PPI
- FEN1
- flap structure-specific…
- 0.982
- Metabolic
- TOLLIP
- toll interacting protein
- 0.970
- PPI
- FIP1L1
- factor interacting with…
- 0.970
- PPI
- POLR2C
- RNA polymerase II subun…
- 0.967
- Metabolic
- WDR3
- WD repeat domain 3
- 0.966
- Metabolic
- BCAS2
- BCAS2 pre-mRNA processi…
- 0.959
- Metabolic
- RBM39
- RNA binding motif prote…
- 0.956
- Metabolic
- POLR2E
- RNA polymerase II subun…
- 0.950
- Metabolic
- BRCA1
- BRCA1 DNA repair associ…
- 0.946
- PPI
- MCM4
- minichromosome maintena…
- 0.944
- Metabolic
- SF3A3
- splicing factor 3a subu…
- 0.941
- Metabolic
- PRPF8
- pre-mRNA processing fac…
- 0.935
- Metabolic
- MCM2
- minichromosome maintena…
- 0.930
- Metabolic
- MRTO4
- MRT4 homolog, ribosome …
- 0.923
- Metabolic
- U2AF1
- U2 small nuclear RNA au…
- 0.920
- Metabolic
- HNRNPA3
- heterogeneous nuclear r…
- 0.919
- Metabolic
- DHX15
- DEAH-box helicase 15
- 0.916
- Metabolic
- CDC73
- cell division cycle 73
- 0.915
- Metabolic
- PSMB4
- proteasome 20S subunit …
- 0.912
- Metabolic
ENSG00000101138
cleavage stimulation factor subunit 1
- Use as query
- Use pair as query
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- Ensembl
- UniProt
- NCBI
PCNA
proliferating cell nuclear antigen
- Use as query
- Use pair as query
- Add to current query
- Ensembl
- UniProt
- NCBI
POLR2C
RNA polymerase II subunit C
- Use as query
- Use pair as query
- Add to current query
- Ensembl
- UniProt
- NCBI
H2AC20
H2A clustered histone 20
- Use as query
- Use pair as query
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- Ensembl
- UniProt
- NCBI
POLR2E
RNA polymerase II subunit E
- Use as query
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- Ensembl
- UniProt
- NCBI
VCP
valosin containing protein
- Use as query
- Use pair as query
- Add to current query
- Ensembl
- UniProt
- NCBI
CPSF2
cleavage and polyadenylation specific factor 2
- Use as query
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- Ensembl
- UniProt
- NCBI
HNRNPA1
heterogeneous nuclear ribonucleoprotein A1
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- Use pair as query
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- Ensembl
- UniProt
- NCBI
BCAS2
BCAS2 pre-mRNA processing factor
- Use as query
- Use pair as query
- Add to current query
- Ensembl
- UniProt
- NCBI
DHX15
DEAH-box helicase 15
- Use as query
- Use pair as query
- Add to current query
- Ensembl
- UniProt
- NCBI
MRTO4
MRT4 homolog, ribosome maturation factor
- Use as query
- Use pair as query
- Add to current query
- Ensembl
- UniProt
- NCBI
MCM4
minichromosome maintenance complex component 4
- Use as query
- Use pair as query
- Add to current query
- Ensembl
- UniProt
- A0A3B3IRR8
- A0A3B3IS57
- A0A3B3IS88
- A0A3B3ISC1
- A0A3B3IT92
- A0A3B3ITP6
- A0A3B3IU45
- E5RFR3
- E5RG31
- E5RG53
- E5RHP5
- P33991
- NCBI
HNRNPA3
heterogeneous nuclear ribonucleoprotein A3
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- Use pair as query
- Add to current query
- Ensembl
- UniProt
- NCBI
FEN1
flap structure-specific endonuclease 1
- Use as query
- Use pair as query
- Add to current query
- Ensembl
- UniProt
- NCBI
POLR2A
RNA polymerase II subunit A
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- Add to current query
- Ensembl
- UniProt
- NCBI
WDR3
WD repeat domain 3
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- Use pair as query
- Add to current query
- Ensembl
- UniProt
- NCBI
RBM39
RNA binding motif protein 39
- Use as query
- Use pair as query
- Add to current query
- Ensembl
- UniProt
- A0A087X122
- A0A0U1RQH7
- A0A0U1RQW2
- A8MYG5
- F2Z2Z5
- F2Z3E6
- F8WF24
- F8WF73
- G3XAC6
- H0Y4X3
- H0Y6I9
- H7BZG3
- Q14498
- Q5QP22
- Q5QP23
- NCBI
SUPT16H
SPT16 homolog, facilitates chromatin remodeling subunit
- Use as query
- Use pair as query
- Add to current query
- Ensembl
- UniProt
- NCBI
MCM2
minichromosome maintenance complex component 2
- Use as query
- Use pair as query
- Add to current query
- Ensembl
- UniProt
- NCBI
CDC73
cell division cycle 73
- Use as query
- Use pair as query
- Add to current query
- Ensembl
- UniProt
- NCBI
U2AF1
U2 small nuclear RNA auxiliary factor 1
- Use as query
- Use pair as query
- Add to current query
- Ensembl
- UniProt
- NCBI
CSTF2T
cleavage stimulation factor subunit 2 tau variant
- Use as query
- Use pair as query
- Add to current query
- Ensembl
- UniProt
- NCBI
PSMB4
proteasome 20S subunit beta 4
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- Use pair as query
- Add to current query
- Ensembl
- UniProt
- NCBI
PRPF8
pre-mRNA processing factor 8
- Use as query
- Use pair as query
- Add to current query
- Ensembl
- UniProt
- NCBI
SF3A3
splicing factor 3a subunit 3
- Use as query
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- Ensembl
- UniProt
- NCBI
GTF2E2
general transcription factor IIE subunit 2
- Use as query
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- Ensembl
- UniProt
- NCBI
BRCA1
BRCA1 DNA repair associated
- Use as query
- Use pair as query
- Add to current query
- Ensembl
- UniProt
- A0A0A0MSN1
- A0A0U1RRA9
- A0A2R8Y587
- A0A2R8Y6Y9
- A0A2R8Y7V5
- A0A494C182
- B7ZA85
- C6YB45
- C9IZW4
- E7ENB7
- E7EQW4
- E7EUM2
- E7EWN5
- E9PC22
- E9PH68
- G1UI37
- H0Y850
- H0Y881
- H0Y8B8
- H0Y8D8
- K7EJW3
- K7EPC7
- P38398
- Q3B891
- Q5YLB2
- NCBI
BARD1
BRCA1 associated RING domain 1
- Use as query
- Use pair as query
- Add to current query
- Ensembl
- UniProt
- NCBI
FIP1L1
factor interacting with PAPOLA and CPSF1
- Use as query
- Use pair as query
- Add to current query
- Ensembl
- UniProt
- NCBI
CSTF2
cleavage stimulation factor subunit 2
- Use as query
- Use pair as query
- Add to current query
- Ensembl
- UniProt
- NCBI
Symbol | Identifier | Description | |||
---|---|---|---|---|---|
30
|
ENSG00000101138 | ENSG00000101138 | cleavage stimulation factor subunit 1 | ||
| A0A087WV92 A0A0A0MSZ9 A3KFI9 Q05048 | ||||
| 1477 | ||||
| mRNA surveillance pathway |
Symbol | Identifier | Description | |||
---|---|---|---|---|---|
28
|
PCNA | ENSG00000132646 | proliferating cell nuclear antigen | ||
| P12004 | ||||
| 5111 | ||||
| Tight junction Cell cycle | ||||
| DNA replication Mismatch repair Nucleotide excision repair Base excision repair | ||||
27
|
POLR2C | ENSG00000102978 | RNA polymerase II subunit C | ||
| H3BRR2 P19387 | ||||
| 5432 | ||||
| RNA polymerase | ||||
17
|
H2AC20 | ENSG00000184260 | H2A clustered histone 20 | ||
| Q16777 | ||||
| 8338 | ||||
27
|
POLR2E | ENSG00000099817 | RNA polymerase II subunit E | ||
| A0A087WVN5 A0A087WVZ9 A0A087WWX0 A0A0A0MQR7 K7EJ87 K7EQN2 P19388 | ||||
| 5434 | ||||
| Cytosolic DNA-sensing pathway | ||||
| RNA polymerase | ||||
25
|
VCP | ENSG00000165280 | valosin containing protein | ||
| C9IZA5 C9JUP7 P55072 | ||||
| 7415 | ||||
| Protein processing in endoplasmic reticulum | ||||
26
|
CPSF2 | ENSG00000165934 | cleavage and polyadenylation specific factor 2 | ||
| G3V3T7 G3V5T3 H0YJF4 Q9P2I0 | ||||
| 53981 | ||||
| mRNA surveillance pathway | ||||
25
|
HNRNPA1 | ENSG00000135486 | heterogeneous nuclear ribonucleoprotein A1 | ||
| F8VTQ5 F8VYN5 F8VZ49 F8W646 F8W6I7 H0YH80 P09651 | ||||
| 3178 | ||||
| Spliceosome | ||||
24
|
BCAS2 | ENSG00000116752 | BCAS2 pre-mRNA processing factor | ||
| O75934 | ||||
| 10286 | ||||
| Spliceosome | ||||
26
|
DHX15 | ENSG00000109606 | DEAH-box helicase 15 | ||
| O43143 | ||||
| 1665 | ||||
| Spliceosome | ||||
24
|
MRTO4 | ENSG00000053372 | MRT4 homolog, ribosome maturation factor | ||
| Q9UKD2 | ||||
| 51154 | ||||
28
|
MCM4 | ENSG00000104738 | minichromosome maintenance complex component 4 | ||
| A0A3B3IRR8 A0A3B3IS57 A0A3B3IS88 A0A3B3ISC1 A0A3B3IT92 A0A3B3ITP6 A0A3B3IU45 E5RFR3 E5RG31 E5RG53 E5RHP5 P33991 | ||||
| 4173 | ||||
| Cell cycle | ||||
| DNA replication | ||||
22
|
HNRNPA3 | ENSG00000170144 | heterogeneous nuclear ribonucleoprotein A3 | ||
| H7C1J8 P51991 | ||||
| 220988 | ||||
| Spliceosome | ||||
25
|
FEN1 | ENSG00000168496 | flap structure-specific endonuclease 1 | ||
| F5H1Y3 I3L3E9 P39748 | ||||
| 2237 | ||||
| DNA replication Non-homologous end-joining Base excision repair | ||||
25
|
POLR2A | ENSG00000181222 | RNA polymerase II subunit A | ||
| A0A590UJN4 A0A590UKB6 P24928 | ||||
| 5430 | ||||
| RNA polymerase | ||||
26
|
WDR3 | ENSG00000065183 | WD repeat domain 3 | ||
| Q6PDA5 Q9UNX4 | ||||
| 10885 | ||||
| Ribosome biogenesis in eukaryotes | ||||
23
|
RBM39 | ENSG00000131051 | RNA binding motif protein 39 | ||
| A0A087X122 A0A0U1RQH7 A0A0U1RQW2 A8MYG5 F2Z2Z5 F2Z3E6 F8WF24 F8WF73 G3XAC6 H0Y4X3 H0Y6I9 H7BZG3 Q14498 Q5QP22 Q5QP23 | ||||
| 9584 | ||||
25
|
SUPT16H | ENSG00000092201 | SPT16 homolog, facilitates chromatin remodeling subunit | ||
| G3V2X0 G3V401 G3V5A4 Q9Y5B9 | ||||
| 11198 | ||||
28
|
MCM2 | ENSG00000073111 | minichromosome maintenance complex component 2 | ||
| C9J013 C9JZ21 F8WDM3 H0Y8E6 H7C4N9 P49736 | ||||
| 4171 | ||||
| Cell cycle | ||||
| DNA replication | ||||
25
|
CDC73 | ENSG00000134371 | cell division cycle 73 | ||
| A0A1B0GUB2 A0A2R8Y640 A0A2R8YHB3 A0A3B3IRP5 A0A3B3ISN2 Q6P1J9 | ||||
| 79577 | ||||
26
|
U2AF1 | ENSG00000160201 | U2 small nuclear RNA auxiliary factor 1 | ||
| A0A1B0GW87 Q01081 | ||||
| 102724594 7307 | ||||
| Spliceosome | ||||
22
|
CSTF2T | ENSG00000177613 | cleavage stimulation factor subunit 2 tau variant | ||
| Q9H0L4 | ||||
| 23283 | ||||
| mRNA surveillance pathway | ||||
23
|
PSMB4 | ENSG00000159377 | proteasome 20S subunit beta 4 | ||
| P28070 | ||||
| 5692 | ||||
| Proteasome | ||||
25
|
PRPF8 | ENSG00000174231 | pre-mRNA processing factor 8 | ||
| I3L0J9 I3L1T8 I3L3Z8 Q6P2Q9 | ||||
| 10594 | ||||
| Spliceosome | ||||
28
|
SF3A3 | ENSG00000183431 | splicing factor 3a subunit 3 | ||
| Q12874 | ||||
| 10946 | ||||
| Spliceosome | ||||
20
|
GTF2E2 | ENSG00000197265 | general transcription factor IIE subunit 2 | ||
| E5RH41 E5RIW4 E5RK24 P29084 | ||||
| 2961 | ||||
| Basal transcription factors | ||||
11
|
BRCA1 | ENSG00000012048 | BRCA1 DNA repair associated | ||
| A0A0A0MSN1 A0A0U1RRA9 A0A2R8Y587 A0A2R8Y6Y9 A0A2R8Y7V5 A0A494C182 B7ZA85 C6YB45 C9IZW4 E7ENB7 E7EQW4 E7EUM2 E7EWN5 E9PC22 E9PH68 G1UI37 H0Y850 H0Y881 H0Y8B8 H0Y8D8 K7EJW3 K7EPC7 P38398 Q3B891 Q5YLB2 | ||||
| 672 | ||||
| PI3K-Akt signaling pathway | ||||
| Fanconi anemia pathway Ubiquitin mediated proteolysis Homologous recombination | ||||
15
|
BARD1 | ENSG00000138376 | BRCA1 associated RING domain 1 | ||
| A0A087WZ19 A0A087X0C6 A0A087X2H0 A0A494C142 C9IYG1 C9J6M1 F6MDI1 F8WCG2 Q99728 | ||||
| 580 | ||||
| Homologous recombination | ||||
7
|
FIP1L1 | ENSG00000145216 | factor interacting with PAPOLA and CPSF1 | ||
| H0Y8J4 H0Y8P7 Q6UN15 | ||||
| 81608 | ||||
| mRNA surveillance pathway | ||||
25
|
CSTF2 | ENSG00000101811 | cleavage stimulation factor subunit 2 | ||
| A0A0A0MT56 E7EWR4 E9PID8 P33240 | ||||
| 1478 | ||||
| mRNA surveillance pathway | ||||
2
|
TOLLIP | ENSG00000078902 | toll interacting protein | ||
| E7EN89 E9PNS3 E9PP67 E9PQ25 F2Z2Y8 Q9H0E2 | ||||
| 54472 | ||||
| Toll-like receptor signaling pathway |
Search for enrichment of pathways or functional gene sets for your subnetwork genes | ||
To use PathwAX, first use the button below to copy the subnetwork genes and then paste them in PathwAX | ||
- Use as query
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jSquid_subnetworks.xml | 329.48 KB | |
H.sapiens_subnetwork.tsv | 66.93 KB |