- Interaction partners
- Confidence
- Network
- Evidence types
- SpeciesHSAMMURNOCFAGGADRECINDMECELBTASCEATHSPOBSUECOPFADDISSOSSCMJAOSA
- In Gold st.
- ID Query gene
- ID Query ortholog
Log-likelihood ratio (LLR) | |
---|---|
Highly positive | |
Positive | |
Zero | |
Negative | |
Highly negative | |
Known coupling | |
This network | |
Other network |
-
- ENSG00000244462
- RNA binding motif prote…
- HNRNPA1
- heterogeneous nuclear r…
- 0.999
- PPI
- SNRNP27
- small nuclear ribonucle…
- 0.996
- PPI
- KLHL20
- kelch like family membe…
- 0.995
- PPI
- TMA16
- translation machinery a…
- 0.995
- PPI
- CIR1
- corepressor interacting…
- 0.990
- PPI
- USP47
- ubiquitin specific pept…
- 0.981
- PPI
- UBC
- ubiquitin C
- 0.980
- PPI
- DHX15
- DEAH-box helicase 15
- 0.970
- Metabolic
- GIGYF2
- GRB10 interacting GYF p…
- 0.954
- PPI
- MTREX
- Mtr4 exosome RNA helica…
- 0.953
- Complex
- LYN
- LYN proto-oncogene, Src…
- 0.942
- PPI
- WDR20
- WD repeat domain 20
- 0.937
- Metabolic
- OPTN
- optineurin
- 0.925
- PPI
- VRK1
- VRK serine/threonine ki…
- 0.924
- Metabolic
- HNRNPA3
- heterogeneous nuclear r…
- 0.892
- Metabolic
- CSTF1
- cleavage stimulation fa…
- 0.885
- Metabolic
- NCBP1
- nuclear cap binding pro…
- 0.882
- Metabolic
- LSM8
- LSM8 homolog, U6 small …
- 0.880
- Metabolic
- DDX18
- DEAD-box helicase 18
- 0.871
- Metabolic
- PRPF40A
- pre-mRNA processing fac…
- 0.852
- Metabolic
- RBM22
- RNA binding motif prote…
- 0.849
- Metabolic
- WDR3
- WD repeat domain 3
- 0.849
- Metabolic
- PPIL1
- peptidylprolyl isomeras…
- 0.842
- Metabolic
- CSTF2T
- cleavage stimulation fa…
- 0.839
- Metabolic
- POLR2B
- RNA polymerase II subun…
- 0.836
- Metabolic
- TRA2B
- transformer 2 beta homo…
- 0.822
- Metabolic
- PRPF8
- pre-mRNA processing fac…
- 0.811
- Complex
- LSM2
- LSM2 homolog, U6 small …
- 0.806
- Metabolic
- PRPF19
- pre-mRNA processing fac…
- 0.800
- Metabolic
- HNRNPA0
- heterogeneous nuclear r…
- 0.800
- Metabolic
ENSG00000244462
RNA binding motif protein 12
- Use as query
- Use pair as query
- Add to current query
- Ensembl
- UniProt
- NCBI
NCBP1
nuclear cap binding protein subunit 1
- Use as query
- Use pair as query
- Add to current query
- Ensembl
- UniProt
- NCBI
VRK1
VRK serine/threonine kinase 1
- Use as query
- Use pair as query
- Add to current query
- Ensembl
- UniProt
- NCBI
POLR2B
RNA polymerase II subunit B
- Use as query
- Use pair as query
- Add to current query
- Ensembl
- UniProt
- NCBI
PRPF19
pre-mRNA processing factor 19
- Use as query
- Use pair as query
- Add to current query
- Ensembl
- UniProt
- NCBI
SNRNP27
small nuclear ribonucleoprotein U4/U6.U5 subunit 27
- Use as query
- Use pair as query
- Add to current query
- Ensembl
- UniProt
- NCBI
HNRNPA1
heterogeneous nuclear ribonucleoprotein A1
- Use as query
- Use pair as query
- Add to current query
- Ensembl
- UniProt
- NCBI
WDR3
WD repeat domain 3
- Use as query
- Use pair as query
- Add to current query
- Ensembl
- UniProt
- NCBI
PRPF40A
pre-mRNA processing factor 40 homolog A
- Use as query
- Use pair as query
- Add to current query
- Ensembl
- UniProt
- NCBI
UBC
ubiquitin C
- Use as query
- Use pair as query
- Add to current query
- Ensembl
- UniProt
- NCBI
LSM2
LSM2 homolog, U6 small nuclear RNA and mRNA degradation associated
- Use as query
- Use pair as query
- Add to current query
- Ensembl
- UniProt
- NCBI
RBM22
RNA binding motif protein 22
- Use as query
- Use pair as query
- Add to current query
- Ensembl
- UniProt
- NCBI
CSTF2T
cleavage stimulation factor subunit 2 tau variant
- Use as query
- Use pair as query
- Add to current query
- Ensembl
- UniProt
- NCBI
DHX15
DEAH-box helicase 15
- Use as query
- Use pair as query
- Add to current query
- Ensembl
- UniProt
- NCBI
HNRNPA3
heterogeneous nuclear ribonucleoprotein A3
- Use as query
- Use pair as query
- Add to current query
- Ensembl
- UniProt
- NCBI
PRPF8
pre-mRNA processing factor 8
- Use as query
- Use pair as query
- Add to current query
- Ensembl
- UniProt
- NCBI
MTREX
Mtr4 exosome RNA helicase
- Use as query
- Use pair as query
- Add to current query
- Ensembl
- UniProt
- NCBI
LSM8
LSM8 homolog, U6 small nuclear RNA associated
- Use as query
- Use pair as query
- Add to current query
- Ensembl
- UniProt
- NCBI
TMA16
translation machinery associated 16 homolog
- Use as query
- Use pair as query
- Add to current query
- Ensembl
- UniProt
- NCBI
OPTN
optineurin
- Use as query
- Use pair as query
- Add to current query
- Ensembl
- UniProt
- NCBI
DDX18
DEAD-box helicase 18
- Use as query
- Use pair as query
- Add to current query
- Ensembl
- UniProt
- NCBI
TRA2B
transformer 2 beta homolog
- Use as query
- Use pair as query
- Add to current query
- Ensembl
- UniProt
- NCBI
KLHL20
kelch like family member 20
- Use as query
- Use pair as query
- Add to current query
- Ensembl
- UniProt
- NCBI
PPIL1
peptidylprolyl isomerase like 1
- Use as query
- Use pair as query
- Add to current query
- Ensembl
- UniProt
- NCBI
WDR20
WD repeat domain 20
- Use as query
- Use pair as query
- Add to current query
- Ensembl
- UniProt
- NCBI
HNRNPA0
heterogeneous nuclear ribonucleoprotein A0
- Use as query
- Use pair as query
- Add to current query
- Ensembl
- UniProt
- NCBI
CSTF1
cleavage stimulation factor subunit 1
- Use as query
- Use pair as query
- Add to current query
- Ensembl
- UniProt
- NCBI
USP47
ubiquitin specific peptidase 47
- Use as query
- Use pair as query
- Add to current query
- Ensembl
- UniProt
- NCBI
LYN
LYN proto-oncogene, Src family tyrosine kinase
- Use as query
- Use pair as query
- Add to current query
- Ensembl
- UniProt
- NCBI
GIGYF2
GRB10 interacting GYF protein 2
- Use as query
- Use pair as query
- Add to current query
- Ensembl
- UniProt
- A0A1U8QZH8
- B8ZZD2
- C9IYH5
- C9J0V6
- C9J1A6
- C9J7G1
- C9JC65
- C9JH18
- C9JH78
- C9JHT0
- C9JHW1
- C9JPV7
- C9JRZ2
- C9JW88
- C9JXQ0
- C9JZC0
- E7ESB6
- F8WBF1
- F8WCD5
- I1E4Y6
- Q6Y7W6
- NCBI
CIR1
corepressor interacting with RBPJ, CIR1
- Use as query
- Use pair as query
- Add to current query
- Ensembl
- UniProt
- NCBI
Symbol | Identifier | Description | |||
---|---|---|---|---|---|
23
|
NCBP1 | ENSG00000136937 | nuclear cap binding protein subunit 1 | ||
| F2Z2T1 Q09161 X6R941 | ||||
| 4686 | ||||
| Spliceosome RNA transport mRNA surveillance pathway | ||||
15
|
VRK1 | ENSG00000100749 | VRK serine/threonine kinase 1 | ||
| H0YJ50 H0YJF7 H0YJJ9 Q99986 | ||||
| 7443 | ||||
17
|
POLR2B | ENSG00000047315 | RNA polymerase II subunit B | ||
| A0A1W2PPT5 C9J2Y9 C9J4M6 C9JMN3 C9JZW8 P30876 | ||||
| 5431 | ||||
| RNA polymerase | ||||
23
|
PRPF19 | ENSG00000110107 | pre-mRNA processing factor 19 | ||
| F5GY56 F5H2I0 H0YGF3 H0YGZ5 Q9UMS4 | ||||
| 27339 | ||||
| Spliceosome Ubiquitin mediated proteolysis | ||||
17
|
SNRNP27 | ENSG00000124380 | small nuclear ribonucleoprotein U4/U6.U5 subunit 27 | ||
| B8ZZ98 H0YBW5 Q8WVK2 | ||||
| 11017 | ||||
| Spliceosome | ||||
19
|
HNRNPA1 | ENSG00000135486 | heterogeneous nuclear ribonucleoprotein A1 | ||
| F8VTQ5 F8VYN5 F8VZ49 F8W646 F8W6I7 H0YH80 P09651 | ||||
| 3178 | ||||
| Spliceosome | ||||
21
|
WDR3 | ENSG00000065183 | WD repeat domain 3 | ||
| Q6PDA5 Q9UNX4 | ||||
| 10885 | ||||
| Ribosome biogenesis in eukaryotes | ||||
23
|
PRPF40A | ENSG00000196504 | pre-mRNA processing factor 40 homolog A | ||
| A0A3F2YNY6 F5H578 H0YG38 H7BXZ7 H7C2N3 O75400 | ||||
| 55660 | ||||
| Spliceosome | ||||
10
|
UBC | ENSG00000150991 | ubiquitin C | ||
| F5GXK7 F5GYU3 F5GZ39 F5H265 F5H2Z3 F5H388 F5H6Q2 F5H747 P0CG48 Q5PY61 Q96C32 | ||||
| 7316 | ||||
| PPAR signaling pathway | ||||
| Ubiquitin mediated proteolysis | ||||
21
|
LSM2 | ENSG00000204392 | LSM2 homolog, U6 small nuclear RNA and mRNA degradation associated | ||
| Q9Y333 | ||||
| 57819 | ||||
| RNA degradation Spliceosome | ||||
20
|
RBM22 | ENSG00000086589 | RNA binding motif protein 22 | ||
| E5RHA8 E5RJW4 Q9NW64 | ||||
| 55696 | ||||
| Spliceosome | ||||
17
|
CSTF2T | ENSG00000177613 | cleavage stimulation factor subunit 2 tau variant | ||
| Q9H0L4 | ||||
| 23283 | ||||
| mRNA surveillance pathway | ||||
25
|
DHX15 | ENSG00000109606 | DEAH-box helicase 15 | ||
| O43143 | ||||
| 1665 | ||||
| Spliceosome | ||||
19
|
HNRNPA3 | ENSG00000170144 | heterogeneous nuclear ribonucleoprotein A3 | ||
| H7C1J8 P51991 | ||||
| 220988 | ||||
| Spliceosome | ||||
25
|
PRPF8 | ENSG00000174231 | pre-mRNA processing factor 8 | ||
| I3L0J9 I3L1T8 I3L3Z8 Q6P2Q9 | ||||
| 10594 | ||||
| Spliceosome | ||||
25
|
MTREX | ENSG00000039123 | Mtr4 exosome RNA helicase | ||
| D6REC7 H0Y8U3 H0YAC4 P42285 | ||||
| 23517 | ||||
| RNA degradation | ||||
19
|
LSM8 | ENSG00000128534 | LSM8 homolog, U6 small nuclear RNA associated | ||
| C9JIZ0 C9JNV3 F2Z2Y6 O95777 | ||||
| 51691 | ||||
| RNA degradation Spliceosome | ||||
12
|
TMA16 | ENSG00000198498 | translation machinery associated 16 homolog | ||
| D6RA57 D6RC31 D6RE67 H0Y9X1 Q96EY4 | ||||
| 55319 | ||||
2
|
OPTN | ENSG00000123240 | optineurin | ||
| A0A087WY28 A0A087X2G2 H7C1H4 Q96CV9 X6RKL2 | ||||
| 10133 | ||||
19
|
DDX18 | ENSG00000088205 | DEAD-box helicase 18 | ||
| H7C452 Q9NVP1 | ||||
| 8886 | ||||
21
|
TRA2B | ENSG00000136527 | transformer 2 beta homolog | ||
| H7BXF3 H7C2L4 P62995 | ||||
| 6434 | ||||
| Spliceosome | ||||
5
|
KLHL20 | ENSG00000076321 | kelch like family member 20 | ||
| Q9Y2M5 | ||||
| 27252 | ||||
18
|
PPIL1 | ENSG00000137168 | peptidylprolyl isomerase like 1 | ||
| Q9Y3C6 | ||||
| 51645 | ||||
| Spliceosome | ||||
17
|
WDR20 | ENSG00000140153 | WD repeat domain 20 | ||
| A0A088AWN2 G3V5V2 H0YK31 H0YKE8 H0YNU0 Q8TBZ3 | ||||
| 91833 | ||||
17
|
HNRNPA0 | ENSG00000177733 | heterogeneous nuclear ribonucleoprotein A0 | ||
| Q13151 | ||||
| 10949 | ||||
14
|
CSTF1 | ENSG00000101138 | cleavage stimulation factor subunit 1 | ||
| A0A087WV92 A0A0A0MSZ9 A3KFI9 Q05048 | ||||
| 1477 | ||||
| mRNA surveillance pathway | ||||
6
|
USP47 | ENSG00000170242 | ubiquitin specific peptidase 47 | ||
| Q96K76 | ||||
| 55031 | ||||
2
|
LYN | ENSG00000254087 | LYN proto-oncogene, Src family tyrosine kinase | ||
| E5RJ37 P07948 | ||||
| 4067 | ||||
| Fc gamma R-mediated phagocytosis Long-term depression Fc epsilon RI signaling pathway B cell receptor signaling pathway NF-kappa B signaling pathway Chemokine signaling pathway | ||||
3
|
GIGYF2 | ENSG00000204120 | GRB10 interacting GYF protein 2 | ||
| A0A1U8QZH8 B8ZZD2 C9IYH5 C9J0V6 C9J1A6 C9J7G1 C9JC65 C9JH18 C9JH78 C9JHT0 C9JHW1 C9JPV7 C9JRZ2 C9JW88 C9JXQ0 C9JZC0 E7ESB6 F8WBF1 F8WCD5 I1E4Y6 Q6Y7W6 | ||||
| 26058 | ||||
3
|
CIR1 | ENSG00000138433 | corepressor interacting with RBPJ, CIR1 | ||
| H3BLY3 Q86X95 | ||||
| 9541 | ||||
| Notch signaling pathway |
Search for enrichment of pathways or functional gene sets for your subnetwork genes | ||
To use PathwAX, first use the button below to copy the subnetwork genes and then paste them in PathwAX | ||
- Use as query
- Add to current query
jSquid_subnetworks.xml | 304.12 KB | |
H.sapiens_subnetwork.tsv | 47.16 KB |