- Interaction partners
- Confidence
- Network
- Evidence types
- SpeciesHSAMMURNOCFAGGADRECINDMECELBTASCEATHSPOBSUECOPFADDISSOSSCMJAOSA
- In Gold st.
- ID Query gene
- ID Query ortholog
Log-likelihood ratio (LLR) | |
---|---|
Highly positive | |
Positive | |
Zero | |
Negative | |
Highly negative | |
Known coupling | |
This network | |
Other network |
-
- ENSG00000229474
- PAT1 homolog 2
- LSM1
- LSM1 homolog, mRNA degr…
- 1.000
- PPI
- LSM3
- LSM3 homolog, U6 small …
- 1.000
- PPI
- LSM2
- LSM2 homolog, U6 small …
- 1.000
- Metabolic
- LSM4
- LSM4 homolog, U6 small …
- 1.000
- PPI
- DDX6
- DEAD-box helicase 6
- 1.000
- PPI
- LSM6
- LSM6 homolog, U6 small …
- 0.999
- Metabolic
- UPF1
- UPF1 RNA helicase and A…
- 0.998
- Metabolic
- LSM14A
- LSM14A mRNA processing …
- 0.997
- PPI
- SF3B3
- splicing factor 3b subu…
- 0.978
- Metabolic
- LSM5
- LSM5 homolog, U6 small …
- 0.973
- Metabolic
- UPF2
- UPF2 regulator of nonse…
- 0.971
- Metabolic
- PABPC1L
- poly(A) binding protein…
- 0.968
- PPI
- LSM14B
- LSM family member 14B
- 0.966
- PPI
- LSM7
- LSM7 homolog, U6 small …
- 0.957
- Metabolic
- TIAL1
- TIA1 cytotoxic granule …
- 0.943
- PPI
- PRPF8
- pre-mRNA processing fac…
- 0.937
- Metabolic
- CNOT3
- CCR4-NOT transcription …
- 0.934
- PPI
- SF3B1
- splicing factor 3b subu…
- 0.934
- PPI
- EIF3A
- eukaryotic translation …
- 0.923
- Metabolic
- SNRNP200
- small nuclear ribonucle…
- 0.902
- Complex
- TOP2B
- DNA topoisomerase II be…
- 0.892
- PPI
- PABPC4
- poly(A) binding protein…
- 0.889
- PPI
- TIA1
- TIA1 cytotoxic granule …
- 0.885
- PPI
- HDLBP
- high density lipoprotei…
- 0.867
- PPI
- PABPC1
- poly(A) binding protein…
- 0.863
- PPI
- NOP58
- NOP58 ribonucleoprotein
- 0.863
- Metabolic
- ALYREF
- Aly/REF export factor
- 0.838
- PPI
- PRPF6
- pre-mRNA processing fac…
- 0.837
- Metabolic
- EEF2
- eukaryotic translation …
- 0.831
- Metabolic
- DDX23
- DEAD-box helicase 23
- 0.823
- Metabolic
ENSG00000229474
PAT1 homolog 2
- Use as query
- Use pair as query
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- Ensembl
- UniProt
- NCBI
PABPC1
poly(A) binding protein cytoplasmic 1
- Use as query
- Use pair as query
- Add to current query
- Ensembl
- UniProt
- A0A087WTT1
- E5RFD8
- E5RGC4
- E5RGH3
- E5RH24
- E5RHG7
- E5RJB9
- E5RJM8
- E7EQV3
- E7ERJ7
- H0YAP2
- H0YAR2
- H0YAS6
- H0YAS7
- H0YAW6
- H0YB75
- H0YB86
- H0YBN4
- H0YC10
- P11940
- NCBI
DDX23
DEAD-box helicase 23
- Use as query
- Use pair as query
- Add to current query
- Ensembl
- UniProt
- NCBI
SF3B1
splicing factor 3b subunit 1
- Use as query
- Use pair as query
- Add to current query
- Ensembl
- UniProt
- NCBI
LSM2
LSM2 homolog, U6 small nuclear RNA and mRNA degradation associated
- Use as query
- Use pair as query
- Add to current query
- Ensembl
- UniProt
- NCBI
EIF3A
eukaryotic translation initiation factor 3 subunit A
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- Use pair as query
- Add to current query
- Ensembl
- UniProt
- NCBI
PRPF8
pre-mRNA processing factor 8
- Use as query
- Use pair as query
- Add to current query
- Ensembl
- UniProt
- NCBI
LSM4
LSM4 homolog, U6 small nuclear RNA and mRNA degradation associated
- Use as query
- Use pair as query
- Add to current query
- Ensembl
- UniProt
- NCBI
PABPC4
poly(A) binding protein cytoplasmic 4
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- Add to current query
- Ensembl
- UniProt
- NCBI
PABPC1L
poly(A) binding protein cytoplasmic 1 like
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- Ensembl
- UniProt
- NCBI
TIAL1
TIA1 cytotoxic granule associated RNA binding protein like 1
- Use as query
- Use pair as query
- Add to current query
- Ensembl
- UniProt
- NCBI
LSM14A
LSM14A mRNA processing body assembly factor
- Use as query
- Use pair as query
- Add to current query
- Ensembl
- UniProt
- NCBI
LSM5
LSM5 homolog, U6 small nuclear RNA and mRNA degradation associated
- Use as query
- Use pair as query
- Add to current query
- Ensembl
- UniProt
- NCBI
TIA1
TIA1 cytotoxic granule associated RNA binding protein
- Use as query
- Use pair as query
- Add to current query
- Ensembl
- UniProt
- NCBI
LSM7
LSM7 homolog, U6 small nuclear RNA and mRNA degradation associated
- Use as query
- Use pair as query
- Add to current query
- Ensembl
- UniProt
- NCBI
EEF2
eukaryotic translation elongation factor 2
- Use as query
- Use pair as query
- Add to current query
- Ensembl
- UniProt
- NCBI
PRPF6
pre-mRNA processing factor 6
- Use as query
- Use pair as query
- Add to current query
- Ensembl
- UniProt
- NCBI
LSM6
LSM6 homolog, U6 small nuclear RNA and mRNA degradation associated
- Use as query
- Use pair as query
- Add to current query
- Ensembl
- UniProt
- NCBI
LSM3
LSM3 homolog, U6 small nuclear RNA and mRNA degradation associated
- Use as query
- Use pair as query
- Add to current query
- Ensembl
- UniProt
- NCBI
LSM1
LSM1 homolog, mRNA degradation associated
- Use as query
- Use pair as query
- Add to current query
- Ensembl
- UniProt
- NCBI
NOP58
NOP58 ribonucleoprotein
- Use as query
- Use pair as query
- Add to current query
- Ensembl
- UniProt
- NCBI
UPF1
UPF1 RNA helicase and ATPase
- Use as query
- Use pair as query
- Add to current query
- Ensembl
- UniProt
- NCBI
LSM14B
LSM family member 14B
- Use as query
- Use pair as query
- Add to current query
- Ensembl
- UniProt
- NCBI
HDLBP
high density lipoprotein binding protein
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- Add to current query
- Ensembl
- UniProt
- A0A024R4E5
- C9J5E5
- C9J739
- C9JB08
- C9JBS3
- C9JE93
- C9JEJ8
- C9JES8
- C9JHN6
- C9JHS7
- C9JHS9
- C9JHZ8
- C9JIZ1
- C9JK79
- C9JMQ6
- C9JQ82
- C9JT62
- C9JZI8
- H0Y394
- H7BZC3
- H7C0A4
- H7C2D1
- H7C3D0
- Q00341
- NCBI
SNRNP200
small nuclear ribonucleoprotein U5 subunit 200
- Use as query
- Use pair as query
- Add to current query
- Ensembl
- UniProt
- NCBI
DDX6
DEAD-box helicase 6
- Use as query
- Use pair as query
- Add to current query
- Ensembl
- UniProt
- NCBI
ALYREF
Aly/REF export factor
- Use as query
- Use pair as query
- Add to current query
- Ensembl
- UniProt
- NCBI
TOP2B
DNA topoisomerase II beta
- Use as query
- Use pair as query
- Add to current query
- Ensembl
- UniProt
- NCBI
SF3B3
splicing factor 3b subunit 3
- Use as query
- Use pair as query
- Add to current query
- Ensembl
- UniProt
- NCBI
CNOT3
CCR4-NOT transcription complex subunit 3
- Use as query
- Use pair as query
- Add to current query
- Ensembl
- UniProt
- NCBI
UPF2
UPF2 regulator of nonsense mediated mRNA decay
- Use as query
- Use pair as query
- Add to current query
- Ensembl
- UniProt
- NCBI
Symbol | Identifier | Description | |||
---|---|---|---|---|---|
28
|
PABPC1 | ENSG00000070756 | poly(A) binding protein cytoplasmic 1 | ||
| A0A087WTT1 E5RFD8 E5RGC4 E5RGH3 E5RH24 E5RHG7 E5RJB9 E5RJM8 E7EQV3 E7ERJ7 H0YAP2 H0YAR2 H0YAS6 H0YAS7 H0YAW6 H0YB75 H0YB86 H0YBN4 H0YC10 P11940 | ||||
| 26986 | ||||
| RNA degradation RNA transport mRNA surveillance pathway | ||||
27
|
DDX23 | ENSG00000174243 | DEAD-box helicase 23 | ||
| F8VVA2 F8W1J5 H0YI52 H0YIL9 Q9BUQ8 | ||||
| 9416 | ||||
| Spliceosome | ||||
30
|
SF3B1 | ENSG00000115524 | splicing factor 3b subunit 1 | ||
| A0A494C1M2 B4DGZ4 F8WC19 H7C341 O75533 | ||||
| 23451 | ||||
| Spliceosome | ||||
27
|
LSM2 | ENSG00000204392 | LSM2 homolog, U6 small nuclear RNA and mRNA degradation associated | ||
| Q9Y333 | ||||
| 57819 | ||||
| RNA degradation Spliceosome | ||||
27
|
EIF3A | ENSG00000107581 | eukaryotic translation initiation factor 3 subunit A | ||
| Q14152 | ||||
| 8661 | ||||
| RNA transport | ||||
29
|
PRPF8 | ENSG00000174231 | pre-mRNA processing factor 8 | ||
| I3L0J9 I3L1T8 I3L3Z8 Q6P2Q9 | ||||
| 10594 | ||||
| Spliceosome | ||||
27
|
LSM4 | ENSG00000130520 | LSM4 homolog, U6 small nuclear RNA and mRNA degradation associated | ||
| M0QXB0 Q9Y4Z0 U3KQK1 V9GZ56 | ||||
| 25804 | ||||
| RNA degradation Spliceosome | ||||
28
|
PABPC4 | ENSG00000090621 | poly(A) binding protein cytoplasmic 4 | ||
| B1ANR0 B1ANR1 H0Y5F5 H0Y6X6 H0YCC8 H0YEQ8 H0YER0 H0YEU6 Q13310 | ||||
| 8761 | ||||
| RNA degradation RNA transport mRNA surveillance pathway | ||||
22
|
PABPC1L | ENSG00000101104 | poly(A) binding protein cytoplasmic 1 like | ||
| F2Z2Z0 H0Y386 Q4VXT4 Q4VXT5 Q4VXT6 Q4VXT8 Q4VXU2 | ||||
25
|
TIAL1 | ENSG00000151923 | TIA1 cytotoxic granule associated RNA binding protein like 1 | ||
| A0A087WX93 A6NKZ9 E7ETC0 E7ETJ9 Q01085 | ||||
| 7073 | ||||
21
|
LSM14A | ENSG00000257103 | LSM14A mRNA processing body assembly factor | ||
| A0A096LP11 I3L4Q1 K7EMZ9 Q8ND56 | ||||
| 26065 | ||||
26
|
LSM5 | ENSG00000106355 | LSM5 homolog, U6 small nuclear RNA and mRNA degradation associated | ||
| B8ZZF8 F8W8Y8 Q9Y4Y9 | ||||
| 23658 | ||||
| RNA degradation Spliceosome | ||||
27
|
TIA1 | ENSG00000116001 | TIA1 cytotoxic granule associated RNA binding protein | ||
| C9JTN7 E5RG67 E5RGV5 F8W8I6 F8WE16 H7BY49 P31483 | ||||
| 7072 | ||||
24
|
LSM7 | ENSG00000130332 | LSM7 homolog, U6 small nuclear RNA and mRNA degradation associated | ||
| A0A087X2I5 K7EML7 K7ENY5 Q9UK45 | ||||
| 51690 | ||||
| RNA degradation Spliceosome | ||||
25
|
EEF2 | ENSG00000167658 | eukaryotic translation elongation factor 2 | ||
| M0R0I6 P13639 | ||||
| 1938 | ||||
| AMPK signaling pathway Oxytocin signaling pathway | ||||
27
|
PRPF6 | ENSG00000101161 | pre-mRNA processing factor 6 | ||
| O94906 | ||||
| 24148 | ||||
| Spliceosome | ||||
26
|
LSM6 | ENSG00000164167 | LSM6 homolog, U6 small nuclear RNA and mRNA degradation associated | ||
| P62312 | ||||
| 11157 | ||||
| RNA degradation Spliceosome | ||||
23
|
LSM3 | ENSG00000170860 | LSM3 homolog, U6 small nuclear RNA and mRNA degradation associated | ||
| P62310 | ||||
| 27258 | ||||
| RNA degradation Spliceosome | ||||
24
|
LSM1 | ENSG00000175324 | LSM1 homolog, mRNA degradation associated | ||
| E5RH18 E5RJ47 O15116 | ||||
| 27257 | ||||
| RNA degradation | ||||
27
|
NOP58 | ENSG00000055044 | NOP58 ribonucleoprotein | ||
| F8WED0 H7BZ72 Q9Y2X3 | ||||
| 51602 | ||||
| Ribosome biogenesis in eukaryotes | ||||
30
|
UPF1 | ENSG00000005007 | UPF1 RNA helicase and ATPase | ||
| Q92900 | ||||
| 5976 | ||||
| RNA transport mRNA surveillance pathway | ||||
13
|
LSM14B | ENSG00000149657 | LSM family member 14B | ||
| A0A0C4DFV2 Q5TBP9 Q5TBQ0 Q5TBQ1 Q9BX40 | ||||
| 149986 | ||||
18
|
HDLBP | ENSG00000115677 | high density lipoprotein binding protein | ||
| A0A024R4E5 C9J5E5 C9J739 C9JB08 C9JBS3 C9JE93 C9JEJ8 C9JES8 C9JHN6 C9JHS7 C9JHS9 C9JHZ8 C9JIZ1 C9JK79 C9JMQ6 C9JQ82 C9JT62 C9JZI8 H0Y394 H7BZC3 H7C0A4 H7C2D1 H7C3D0 Q00341 | ||||
| 3069 | ||||
27
|
SNRNP200 | ENSG00000144028 | small nuclear ribonucleoprotein U5 subunit 200 | ||
| A0A494C1A5 O75643 | ||||
| 23020 | ||||
| Spliceosome | ||||
28
|
DDX6 | ENSG00000110367 | DEAD-box helicase 6 | ||
| P26196 Q8IV96 | ||||
| 1656 | ||||
| RNA degradation | ||||
30
|
ALYREF | ENSG00000183684 | Aly/REF export factor | ||
| E9PB61 Q86V81 | ||||
| 10189 | ||||
| Spliceosome RNA transport mRNA surveillance pathway | ||||
20
|
TOP2B | ENSG00000077097 | DNA topoisomerase II beta | ||
| E9PCY5 H7BZ82 Q02880 | ||||
| 7155 | ||||
27
|
SF3B3 | ENSG00000189091 | splicing factor 3b subunit 3 | ||
| H3BMB0 I3L4G7 J3QKV4 J3QL37 J3QRB2 Q15393 | ||||
| 23450 | ||||
| Spliceosome | ||||
10
|
CNOT3 | ENSG00000088038 | CCR4-NOT transcription complex subunit 3 | ||
| A0A087X0F9 A0A2R8Y4W0 A0A2R8Y691 A0A2R8Y6N5 A0A2R8Y7Z8 B7Z6J7 H0Y5X7 H7C148 H7C3F5 H7C5J4 O75175 | ||||
| 4849 | ||||
| RNA degradation | ||||
19
|
UPF2 | ENSG00000151461 | UPF2 regulator of nonsense mediated mRNA decay | ||
| Q9HAU5 | ||||
| 26019 |
Search for enrichment of pathways or functional gene sets for your subnetwork genes | ||
To use PathwAX, first use the button below to copy the subnetwork genes and then paste them in PathwAX | ||
- Use as query
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jSquid_subnetworks.xml | 312.16 KB | |
H.sapiens_subnetwork.tsv | 74.65 KB |