Found 1 of 1 query genes
Query interactions
- Interaction partners
- Confidence
- Network
- Evidence types
- SpeciesHSAMMURNOCFAGGADRECINDMECELBTASCEATHSPOBSUECOPFADDISSOSSCMJAOSA
- In Gold st.
- ID Query gene
- ID Query ortholog
Log-likelihood ratio (LLR) | |
---|---|
Highly positive | |
Positive | |
Zero | |
Negative | |
Highly negative | |
Known coupling | |
This network | |
Other network |
-
- ENSG00000136444
- radical S-adenosyl meth…
- WDR53
- WD repeat domain 53
- 0.987
- PPI
- TRMT1
- tRNA methyltransferase 1
- 0.948
- PPI
- MRPL15
- mitochondrial ribosomal…
- 0.906
- Complex
- KLHDC2
- kelch domain containing…
- 0.808
- Complex
- LIG3
- DNA ligase 3
- 0.774
- PPI
- MARS2
- methionyl-tRNA syntheta…
- 0.687
- Complex
- AARS1
- alanyl-tRNA synthetase 1
- 0.669
- Metabolic
- MRPL11
- mitochondrial ribosomal…
- 0.601
- Metabolic
- SF3B4
- splicing factor 3b subu…
- 0.559
- Metabolic
- MRPS2
- mitochondrial ribosomal…
- 0.549
- Complex
- METAP1D
- methionyl aminopeptidas…
- 0.479
- Complex
- DDX56
- DEAD-box helicase 56
- 0.475
- Metabolic
- EARS2
- glutamyl-tRNA synthetas…
- 0.467
- Metabolic
- EXOSC8
- exosome component 8
- 0.436
- Metabolic
- MUS81
- MUS81 structure-specifi…
- 0.434
- Complex
- SSBP1
- single stranded DNA bin…
- 0.408
- Metabolic
- BPNT1
- 3'(2'), 5'-bisphosphate…
- 0.408
- PPI
Subnetwork gene interactions
ENSG00000136444
radical S-adenosyl methionine domain containing 1
FunCoup
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- Ensembl
- UniProt
- NCBI
EARS2
glutamyl-tRNA synthetase 2, mitochondrial
FunCoup
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- Ensembl
- UniProt
- NCBI
TRMT1
tRNA methyltransferase 1
FunCoup
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- Ensembl
- UniProt
- NCBI
SSBP1
single stranded DNA binding protein 1
FunCoup
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- Ensembl
- UniProt
- NCBI
AARS1
alanyl-tRNA synthetase 1
FunCoup
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- Ensembl
- UniProt
- NCBI
WDR53
WD repeat domain 53
FunCoup
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- Ensembl
- UniProt
- NCBI
EXOSC8
exosome component 8
FunCoup
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- Ensembl
- UniProt
- NCBI
MRPL15
mitochondrial ribosomal protein L15
FunCoup
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- Ensembl
- UniProt
- NCBI
MARS2
methionyl-tRNA synthetase 2, mitochondrial
FunCoup
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- Ensembl
- UniProt
- NCBI
MRPS2
mitochondrial ribosomal protein S2
FunCoup
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- Ensembl
- UniProt
- NCBI
MRPL11
mitochondrial ribosomal protein L11
FunCoup
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- Ensembl
- UniProt
- NCBI
SF3B4
splicing factor 3b subunit 4
FunCoup
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- Ensembl
- UniProt
- NCBI
DDX56
DEAD-box helicase 56
FunCoup
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- Ensembl
- UniProt
- NCBI
MUS81
MUS81 structure-specific endonuclease subunit
FunCoup
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- Ensembl
- UniProt
- NCBI
KLHDC2
kelch domain containing 2
FunCoup
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- Ensembl
- UniProt
- NCBI
METAP1D
methionyl aminopeptidase type 1D, mitochondrial
FunCoup
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- Ensembl
- UniProt
- NCBI
LIG3
DNA ligase 3
FunCoup
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- Ensembl
- UniProt
- NCBI
Query genes
Subnetwork genes
Symbol | Identifier | Description | |||
---|---|---|---|---|---|
9
|
EARS2 | ENSG00000103356 | glutamyl-tRNA synthetase 2, mitochondrial | ||
| H3BPY3 H3BQI0 H3BQP8 H3BTB7 I3L166 Q5JPH6 | ||||
| 124454 | ||||
| Aminoacyl-tRNA biosynthesis Porphyrin and chlorophyll metabolism | ||||
10
|
TRMT1 | ENSG00000104907 | tRNA methyltransferase 1 | ||
| K7EJX9 K7EMZ2 K7ENI9 K7EQQ8 K7EQU7 K7EQY6 K7ERR5 Q9NXH9 | ||||
| 55621 | ||||
9
|
SSBP1 | ENSG00000106028 | single stranded DNA binding protein 1 | ||
| C9J8J0 C9K0U8 E7EUY5 Q04837 | ||||
| 6742 | ||||
| DNA replication Homologous recombination Mismatch repair | ||||
12
|
AARS1 | ENSG00000090861 | alanyl-tRNA synthetase 1 | ||
| H3BPK7 P49588 | ||||
| 16 | ||||
| Aminoacyl-tRNA biosynthesis | ||||
5
|
WDR53 | ENSG00000185798 | WD repeat domain 53 | ||
| C9JBE7 C9JDR5 C9JJZ8 C9JQN1 Q7Z5U6 | ||||
| 348793 | ||||
10
|
EXOSC8 | ENSG00000120699 | exosome component 8 | ||
| H7C581 H7C5Z2 Q96B26 | ||||
| 11340 | ||||
| RNA degradation | ||||
13
|
MRPL15 | ENSG00000137547 | mitochondrial ribosomal protein L15 | ||
| E5RHF4 E5RIZ4 Q9P015 | ||||
| 29088 | ||||
| Ribosome | ||||
9
|
MARS2 | ENSG00000247626 | methionyl-tRNA synthetase 2, mitochondrial | ||
| Q96GW9 | ||||
| 92935 | ||||
| Selenocompound metabolism Aminoacyl-tRNA biosynthesis | ||||
6
|
MRPS2 | ENSG00000122140 | mitochondrial ribosomal protein S2 | ||
| Q5T8A0 Q9Y399 | ||||
| 51116 | ||||
| Ribosome | ||||
12
|
MRPL11 | ENSG00000174547 | mitochondrial ribosomal protein L11 | ||
| E9PQB6 H0YCD5 Q9Y3B7 | ||||
| 65003 | ||||
| Ribosome | ||||
8
|
SF3B4 | ENSG00000143368 | splicing factor 3b subunit 4 | ||
| Q15427 Q5SZ64 | ||||
| 10262 | ||||
| Spliceosome | ||||
9
|
DDX56 | ENSG00000136271 | DEAD-box helicase 56 | ||
| F8WDT8 F8WEI3 G3V0G3 H7BZN7 H7C3E9 Q9NY93 | ||||
| 54606 | ||||
7
|
MUS81 | ENSG00000172732 | MUS81 structure-specific endonuclease subunit | ||
| E9PII7 E9PL60 E9PRI1 H0YDE3 H0YDK3 H0YDU2 H0YE94 Q96NY9 | ||||
| 80198 | ||||
| Fanconi anemia pathway Homologous recombination | ||||
1
|
KLHDC2 | ENSG00000165516 | kelch domain containing 2 | ||
| G3V2H2 G3V3U8 Q9Y2U9 | ||||
| 23588 | ||||
5
|
METAP1D | ENSG00000172878 | methionyl aminopeptidase type 1D, mitochondrial | ||
| Q6UB28 | ||||
| 254042 | ||||
1
|
LIG3 | ENSG00000005156 | DNA ligase 3 | ||
| K7EJR4 K7ELY6 K7ENR9 K7EQB6 K7ERZ5 P49916 | ||||
| 3980 | ||||
| Base excision repair | ||||
1
|
BPNT1 | ENSG00000162813 | 3'(2'), 5'-bisphosphate nucleotidase 1 | ||
| A6NF51 F8VRY7 F8VVW8 F8VZG4 F8W1J0 O95861 | ||||
| 10380 | ||||
| Sulfur metabolism |
Enrichment analysis
Search for enrichment of pathways or functional gene sets for your subnetwork genes | ||
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jSquid_subnetworks.xml | 156.77 KB | |
H.sapiens_subnetwork.tsv | 13.79 KB |