Found 1 of 1 query genes

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Query interactions

Interaction partners
Confidence
Network
MEX
PIN
SCL
PHP
MIR
TFB
PEX
GIN
DOM
QMS
GRG
Evidence types
HSA
MMU
RNO
CFA
GGA
DRE
CIN
DME
CEL
BTA
SCE
ATH
SPO
BSU
ECO
PFA
DDI
SSO
SSC
MJA
OSA
Species
In Gold st.

ID Query gene
ID Query ortholog

Log-likelihood ratio (LLR)
	Highly positive
	Positive
	Zero
	Negative
	Highly negative
Known coupling
	This network
	Other network

2. ENSG00000089094
3. lysine demethylase 2B
- 2. SKP1
  3. S-phase kinase associat…
  4. 0.998
  5. PPI
- 2. RNF2
  3. ring finger protein 2
  4. 0.997
  5. PPI
- 2. BCOR
  3. BCL6 corepressor
  4. 0.992
  5. PPI
- 2. PRPF19
  3. pre-mRNA processing fac…
  4. 0.978
  5. Metabolic
- 2. CDC73
  3. cell division cycle 73
  4. 0.974
  5. Complex
- 2. RBBP4
  3. RB binding protein 4, c…
  4. 0.973
  5. Complex
- 2. CSNK2A1
  3. casein kinase 2 alpha 1
  4. 0.973
  5. Complex
- 2. CBX8
  3. chromobox 8
  4. 0.970
  5. PPI
- 2. WDR5
  3. WD repeat domain 5
  4. 0.966
  5. Complex
- 2. L3MBTL2
  3. L3MBTL histone methyl-l…
  4. 0.962
  5. Complex
- 2. WDHD1
  3. WD repeat and HMG-box D…
  4. 0.961
  5. Metabolic
- 2. CSNK2B
  3. casein kinase 2 beta
  4. 0.960
  5. Complex
- 2. PCGF1
  3. polycomb group ring fin…
  4. 0.959
  5. PPI
- 2. PCGF3
  3. polycomb group ring fin…
  4. 0.957
  5. Complex
- 2. TAF5
  3. TATA-box binding protei…
  4. 0.934
  5. Metabolic
- 2. XRCC5
  3. X-ray repair cross comp…
  4. 0.932
  5. Complex
- 2. THOC3
  3. THO complex 3
  4. 0.930
  5. Metabolic
- 2. KDM1A
  3. lysine demethylase 1A
  4. 0.926
  5. PPI
- 2. HIRA
  3. histone cell cycle regu…
  4. 0.920
  5. Metabolic
- 2. POLA1
  3. DNA polymerase alpha 1,…
  4. 0.918
  5. Metabolic
- 2. RBBP5
  3. RB binding protein 5, h…
  4. 0.914
  5. Metabolic
- 2. RRN3
  3. RRN3 homolog, RNA polym…
  4. 0.908
  5. Metabolic
- 2. TFDP1
  3. transcription factor Dp…
  4. 0.908
  5. Complex
- 2. RBBP7
  3. RB binding protein 7, c…
  4. 0.906
  5. Complex
- 2. CDC40
  3. cell division cycle 40
  4. 0.899
  5. Metabolic
- 2. SMARCA5
  3. SWI/SNF related, matrix…
  4. 0.885
  5. Complex
- 2. RING1
  3. ring finger protein 1
  4. 0.880
  5. PPI
- 2. UTP15
  3. UTP15 small subunit pro…
  4. 0.877
  5. Metabolic
- 2. THOC6
  3. THO complex 6
  4. 0.864
  5. Complex
- 2. MTA1
  3. metastasis associated 1
  4. 0.855
  5. Complex

Subnetwork gene interactions

ENSG00000089094

lysine demethylase 2B

FunCoup

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Ensembl

ENSG00000089094

UniProt

NCBI

84678

WDHD1

WD repeat and HMG-box DNA binding protein 1

FunCoup

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Ensembl

ENSG00000198554

UniProt

NCBI

11169

CSNK2B

casein kinase 2 beta

FunCoup

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Ensembl

ENSG00000204435

UniProt

NCBI

1460

RRN3

RRN3 homolog, RNA polymerase I transcription factor

FunCoup

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Ensembl

ENSG00000085721

UniProt

NCBI

54700

RBBP7

RB binding protein 7, chromatin remodeling factor

FunCoup

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Ensembl

ENSG00000102054

UniProt

NCBI

5931

HIRA

histone cell cycle regulator

FunCoup

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Ensembl

ENSG00000100084

UniProt

NCBI

7290

CBX8

chromobox 8

FunCoup

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Ensembl

ENSG00000141570

UniProt

NCBI

57332

MTA1

metastasis associated 1

FunCoup

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Ensembl

ENSG00000182979

UniProt

NCBI

9112

RNF2

ring finger protein 2

FunCoup

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Ensembl

ENSG00000121481

UniProt

NCBI

6045

THOC3

THO complex 3

FunCoup

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Ensembl

ENSG00000051596

UniProt

NCBI

84321

RBBP5

RB binding protein 5, histone lysine methyltransferase complex subunit

FunCoup

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Ensembl

ENSG00000117222

UniProt

Q15291

NCBI

5929

CDC40

cell division cycle 40

FunCoup

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Ensembl

ENSG00000168438

UniProt

NCBI

51362

TAF5

TATA-box binding protein associated factor 5

FunCoup

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Ensembl

ENSG00000148835

UniProt

Q15542

NCBI

6877

CDC73

cell division cycle 73

FunCoup

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Ensembl

ENSG00000134371

UniProt

NCBI

79577

BCOR

BCL6 corepressor

FunCoup

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Ensembl

ENSG00000183337

UniProt

NCBI

54880

PRPF19

pre-mRNA processing factor 19

FunCoup

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Ensembl

ENSG00000110107

UniProt

NCBI

27339

RBBP4

RB binding protein 4, chromatin remodeling factor

FunCoup

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Ensembl

ENSG00000162521

UniProt

NCBI

5928

WDR5

WD repeat domain 5

FunCoup

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Ensembl

ENSG00000196363

UniProt

NCBI

11091

TFDP1

transcription factor Dp-1

FunCoup

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Ensembl

ENSG00000198176

UniProt

NCBI

7027

UTP15

UTP15 small subunit processome component

FunCoup

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Ensembl

ENSG00000164338

UniProt

NCBI

84135

KDM1A

lysine demethylase 1A

FunCoup

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Ensembl

ENSG00000004487

UniProt

NCBI

23028

PCGF1

polycomb group ring finger 1

FunCoup

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Ensembl

ENSG00000115289

UniProt

Q9BSM1

NCBI

84759

XRCC5

X-ray repair cross complementing 5

FunCoup

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Ensembl

ENSG00000079246

UniProt

NCBI

7520

RING1

ring finger protein 1

FunCoup

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Ensembl

ENSG00000204227

UniProt

Q06587

NCBI

6015

CSNK2A1

casein kinase 2 alpha 1

FunCoup

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Ensembl

ENSG00000101266

UniProt

NCBI

1457

SKP1

S-phase kinase associated protein 1

FunCoup

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Ensembl

ENSG00000113558

UniProt

NCBI

6500

L3MBTL2

L3MBTL histone methyl-lysine binding protein 2

FunCoup

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Ensembl

ENSG00000100395

UniProt

NCBI

83746

SMARCA5

SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 5

FunCoup

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Ensembl

ENSG00000153147

UniProt

O60264

NCBI

8467

PCGF3

polycomb group ring finger 3

FunCoup

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Ensembl

ENSG00000185619

UniProt

NCBI

10336

THOC6

THO complex 6

FunCoup

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Ensembl

ENSG00000131652

UniProt

Q86W42

NCBI

79228

POLA1

DNA polymerase alpha 1, catalytic subunit

FunCoup

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Ensembl

ENSG00000101868

UniProt

NCBI

5422

Query genes

		Identifier	Description
30	ENSG00000089094	ENSG00000089094	lysine demethylase 2B
		UniProt	A0A0C4DGG3 F5GXC2 F5GXW2 F5H0A1 F5H4A7 F5H4X4 F5H5W7 F5H6N6 F5H7T7 F6SRV7 F8WBN2 Q8NHM5 S4R3G4
		NCBI	84678

Subnetwork genes

		Identifier	Description
25	WDHD1	ENSG00000198554	WD repeat and HMG-box DNA binding protein 1
		UniProt	C9JYB3 H3BSQ1 O75717
		NCBI	11169
25	CSNK2B	ENSG00000204435	casein kinase 2 beta
		UniProt	P67870 Q5SRQ6
		NCBI	1460
		KEGG signaling	Adherens junction Wnt signaling pathway NF-kappa B signaling pathway
		KEGG metabolic	Ribosome biogenesis in eukaryotes
17	RRN3	ENSG00000085721	RRN3 homolog, RNA polymerase I transcription factor
		UniProt	F5H148 H3BMT1 Q9NYV6
		NCBI	54700
28	RBBP7	ENSG00000102054	RB binding protein 7, chromatin remodeling factor
		UniProt	C9J7L0 C9JAJ9 E9PC52 Q16576 Q5JNZ6 Q5JP01 Q5JP02
		NCBI	5931
18	HIRA	ENSG00000100084	histone cell cycle regulator
		UniProt	H7C2A7 P54198
		NCBI	7290
23	CBX8	ENSG00000141570	chromobox 8
		UniProt	C9J6K3 C9JM54 Q9HC52
		NCBI	57332
20	MTA1	ENSG00000182979	metastasis associated 1
		UniProt	E7ESY4 F8W9Y9 H0Y4T7 H0YIT0 H7C3F3 Q13330
		NCBI	9112
24	RNF2	ENSG00000121481	ring finger protein 2
		UniProt	Q99496 X6RFN3
		NCBI	6045
16	THOC3	ENSG00000051596	THO complex 3
		UniProt	D6REC9 D6RGZ2 H0Y9T1 H0YA11 H0YAG7 H0YAJ0 H7C0C5 Q96J01
		NCBI	84321
		KEGG metabolic	Spliceosome RNA transport
18	RBBP5	ENSG00000117222	RB binding protein 5, histone lysine methyltransferase complex subunit
		UniProt	Q15291
		NCBI	5929
16	CDC40	ENSG00000168438	cell division cycle 40
		UniProt	O60508 Q5SRN1
		NCBI	51362
		KEGG metabolic	Spliceosome
23	TAF5	ENSG00000148835	TATA-box binding protein associated factor 5
		UniProt	Q15542
		NCBI	6877
		KEGG metabolic	Basal transcription factors
29	CDC73	ENSG00000134371	cell division cycle 73
		UniProt	A0A1B0GUB2 A0A2R8Y640 A0A2R8YHB3 A0A3B3IRP5 A0A3B3ISN2 Q6P1J9
		NCBI	79577
17	BCOR	ENSG00000183337	BCL6 corepressor
		UniProt	A0A5F9ZGX7 A1A564 C9JHP3 H7BYY2 H7BZ37 H7C231 H7C2V9 Q6W2J9
		NCBI	54880
21	PRPF19	ENSG00000110107	pre-mRNA processing factor 19
		UniProt	F5GY56 F5H2I0 H0YGF3 H0YGZ5 Q9UMS4
		NCBI	27339
		KEGG metabolic	Spliceosome Ubiquitin mediated proteolysis
30	RBBP4	ENSG00000162521	RB binding protein 4, chromatin remodeling factor
		UniProt	C9JPP3 E9PIC4 E9PND5 E9PNS2 E9PNS6 H0YCT5 H0YDK2 H0YEU5 H0YF10 Q09028
		NCBI	5928
27	WDR5	ENSG00000196363	WD repeat domain 5
		UniProt	P61964 V9GYQ5 V9GZ59
		NCBI	11091
26	TFDP1	ENSG00000198176	transcription factor Dp-1
		UniProt	F5H452 Q14186 Q5JSB5 Q5JSB6
		NCBI	7027
		KEGG signaling	Cell cycle TGF-beta signaling pathway
17	UTP15	ENSG00000164338	UTP15 small subunit processome component
		UniProt	A0A1Y8EI88 D6RF65 H0Y8P4 Q8TED0
		NCBI	84135
		KEGG metabolic	Ribosome biogenesis in eukaryotes
29	KDM1A	ENSG00000004487	lysine demethylase 1A
		UniProt	O60341 R4GMP9 R4GMQ1
		NCBI	23028
19	PCGF1	ENSG00000115289	polycomb group ring finger 1
		UniProt	Q9BSM1
		NCBI	84759
29	XRCC5	ENSG00000079246	X-ray repair cross complementing 5
		UniProt	C9JZ81 H7C0H9 P13010
		NCBI	7520
		KEGG metabolic	Non-homologous end-joining
21	RING1	ENSG00000204227	ring finger protein 1
		UniProt	Q06587
		NCBI	6015
28	CSNK2A1	ENSG00000101266	casein kinase 2 alpha 1
		UniProt	A0A087WY74 A0A2R8Y3W6 A0A2R8Y4D6 A0A2R8Y4H0 A0A2R8Y5A0 A0A2R8Y797 A0A2R8Y7T1 A0A2R8YCC9 A0A2R8YCK2 A0A2R8YD58 A0A2R8YDP2 A0A2R8YDY7 A0A2R8YEL7 A0A2R8YEW1 A0A2R8YF43 A0A2R8YF47 A0A2R8YFU2 E7EU96 P68400 V9GY80 V9GYA2 V9GYW6
		NCBI	1457
		KEGG signaling	Adherens junction Wnt signaling pathway NF-kappa B signaling pathway
		KEGG metabolic	Ribosome biogenesis in eukaryotes
23	SKP1	ENSG00000113558	S-phase kinase associated protein 1
		UniProt	E5RGM3 E5RGM4 E5RHM3 E5RJR5 E5RK33 E7ERH2 F8W8N3 P63208
		NCBI	6500
		KEGG signaling	Oocyte meiosis Wnt signaling pathway Cell cycle TGF-beta signaling pathway
		KEGG metabolic	Ubiquitin mediated proteolysis Protein processing in endoplasmic reticulum
22	L3MBTL2	ENSG00000100395	L3MBTL histone methyl-lysine binding protein 2
		UniProt	F8WBL1 H0Y5M2 H7C228 Q969R5
		NCBI	83746
30	SMARCA5	ENSG00000153147	SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 5
		UniProt	O60264
		NCBI	8467
20	PCGF3	ENSG00000185619	polycomb group ring finger 3
		UniProt	A0A087WVH5 B5MEC4 C9J3G7 C9JGV3 C9JYD0 F2Z3P3 Q3KNV8
		NCBI	10336
23	THOC6	ENSG00000131652	THO complex 6
		UniProt	Q86W42
		NCBI	79228
		KEGG metabolic	RNA transport
20	POLA1	ENSG00000101868	DNA polymerase alpha 1, catalytic subunit
		UniProt	A0A087WU64 A0A5F9ZHW2 A6NMQ1 P09884
		NCBI	5422
		KEGG metabolic	DNA replication

Enrichment analysis

Search for enrichment of pathways or functional gene sets for your subnetwork genes

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	jSquid_subnetworks.xml	289.38 KB
	H.sapiens_subnetwork.tsv	62.89 KB

Species:

Network information:

Filter Results:

Network appearance:

ENSG00000089094

WDHD1

CSNK2B

RRN3

RBBP7

HIRA

CBX8

MTA1

RNF2

THOC3

RBBP5

CDC40

TAF5

CDC73

BCOR

PRPF19

RBBP4

WDR5

TFDP1

UTP15

KDM1A

PCGF1

XRCC5

RING1

CSNK2A1

SKP1

L3MBTL2

SMARCA5

PCGF3

THOC6

POLA1

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