| Dataset name in the downloadable files | Species | Data type ? | Applied metric ? | Metric range | Data source |
| ath_colocalization_athaliana_tair_go_biomart_final | ath | SCL | WMI | 0...0.7 | Gene Ontology (cellular compartment) (GO) |
| ath_pearson_atha_gse12404_seed_compartments_at_5_discrete_stag | ath | MEX | PLC | -1...1 | Seed compartments at 5 discrete stages (Zuber et al.,2010) |
| ath_pearson_averx63_all_normalized | ath | MEX | PLC | -1...1 | Expression map of development (Schmid et al.,2005) |
| ath_ppi_intact_ath_2011 | ath | PPI | PPI score | 0...1 | IntAct (Aranda et al., 2010) |
| ath_tf_cotarget_regulogs_tf_2_target_thaliana | ath | TFB | TF score | 0...10 | protein-DNA regulogs (Yu et al., 2004) |
| ath_unidomint_unidomint_pfam | ath | DOM | UniDomInt sum | 0.04...8.78 | Unification of domain-domain interactions (Bjorkholm&Sonnhammer, 2009) |
| cel_colocalization_celegans_wb_go_final | cel | SCL | WMI | 0...0.7 | Gene Ontology (cellular compartment) (GO) |
| cel_mirna_cotarget_mirbase_mirna_2_target_worm | cel | MIR | miRNA score | 0...2.5 | miRBase targets, v.17 (MicroCosm) |
| cel_pearson_cele_gse21012_toxicant_physiological_mode_of_actio | cel | MEX | PLC | -1...1 | Toxicant physiological mode of action (Swain et al.,2010) |
| cel_pearson_cele_gse2180_embryonic_timecourse_in_wt_and_mutant | cel | MEX | PLC | -1...1 | Time courses for 4 different genotypes (Baugh LR et al.,2011) |
| cel_pearson_cele_gse22383_insulin_like_signaling_stress_respon | cel | MEX | PLC | -1...1 | Insulin-like signaling (McColl et al., 2011) |
| cel_ppi_intact_cel_2011 | cel | PPI | PPI score | 0...1 | IntAct (Aranda et al., 2010) |
| cel_tf_cotarget_regulogs_tf_2_target_worm | cel | TFB | TF score | 0...10 | protein-DNA regulogs (Yu et al., 2004) |
| cel_unidomint_unidomint_pfam | cel | DOM | UniDomInt sum | 0.04...8.78 | Unification of domain-domain interactions (Bjorkholm&Sonnhammer, 2009) |
| cfa_colocalization_cfamiliaris_ensgene_go_biomart_final | cfa | SCL | WMI | 0...0.7 | Gene Ontology (cellular compartment) (GO) |
| cfa_mirna_cotarget_mirbase_mirna_2_target_dog | cfa | MIR | miRNA score | 0...2.5 | miRBase targets, v.17 (MicroCosm) |
| cfa_pearson_cfam_gse20113_canine_normal_tissue | cfa | MEX | PLC | -1...1 | Canine normal tissue (Briggs J.,2010) |
| cfa_pearson_cfam_gse23760_canine_hemangiosarcoma | cfa | MEX | PLC | -1...1 | Distinguishing features of canine hemangiosarcoma (Beth, Tamburini, 2010) |
| cfa_unidomint_unidomint_pfam | cfa | DOM | UniDomInt sum | 0.04...8.78 | Unification of domain-domain interactions (Bjorkholm&Sonnhammer, 2009) |
| cin_colocalization_cintestinalis_ensgene_go_biomart_final | cin | SCL | WMI | 0...0.7 | Gene Ontology (cellular compartment) (GO) |
| cin_unidomint_unidomint_pfam | cin | DOM | UniDomInt sum | 0.04...8.78 | Unification of domain-domain interactions (Bjorkholm&Sonnhammer, 2009) |
| dme_colocalization_dmelanogaster_ensgene_go_final | dme | SCL | WMI | 0...0.7 | Gene Ontology (cellular compartment) (GO) |
| dme_mirna_cotarget_mirbase_mirna_2_target_fly | dme | MIR | miRNA score | 0...2.5 | miRBase targets, v.17 (MicroCosm) |
| dme_pearson_dmel_gse11280_study_of_drosophila_cell_lines | dme | MEX | PLC | -1...1 | Drosophila cell lines (Lucy Cherbas.,2009) |
| dme_pearson_dmel_gse11316_whole_genome_microarray_analysis_of_ | dme | MEX | PLC | -1...1 | Whole genome microarray analysis (Lebo MS et al.,2009) |
| dme_ppi_intact_dme_2011 | dme | PPI | PPI score | 0...1 | IntAct (Aranda et al., 2010) |
| dme_tf_cotarget_regulogs_tf_2_target_fly | dme | TFB | TF score | 0...10 | protein-DNA regulogs (Yu et al., 2004) |
| dme_unidomint_unidomint_pfam | dme | DOM | UniDomInt sum | 0.04...8.78 | Unification of domain-domain interactions (Bjorkholm&Sonnhammer, 2009) |
| dre_colocalization_drerio_ensgene_go_final | dre | SCL | WMI | 0...0.7 | Gene Ontology (cellular compartment) (GO) |
| dre_mirna_cotarget_mirbase_mirna_2_target_zfish | dre | MIR | miRNA score | 0...2.5 | miRBase targets, v.17 (MicroCosm) |
| dre_pearson_drer_gse24616_zebrafish_developmetal_stages | dre | MEX | PLC | -1...1 | Zebrafish developmetal stages (Domazet-Loso, 2010) |
| dre_unidomint_unidomint_pfam | dre | DOM | UniDomInt sum | 0.04...8.78 | Unification of domain-domain interactions (Bjorkholm&Sonnhammer, 2009) |
| gga_colocalization_ggallus_ensgene_go_biomart_final | gga | SCL | WMI | 0...0.7 | Gene Ontology (cellular compartment) (GO) |
| gga_mirna_cotarget_mirbase_mirna_2_target_chicken | gga | MIR | miRNA score | 0...2.5 | miRBase targets, v.17 (MicroCosm) |
| gga_pearson_expdatagga_gse9745_valuesrawfinal | gga | MEX | PLC | -1...1 | Hepatic transcriptional profiling (Trakooljul et al.,2011) |
| gga_pearson_expdatagse10538_valueslognorm | gga | MEX | PLC | -1...1 | Regulation of the early embryonic RPE (Sun R et al.,2008) |
| gga_unidomint_unidomint_pfam | gga | DOM | UniDomInt sum | 0.04...8.78 | Unification of domain-domain interactions (Bjorkholm&Sonnhammer, 2009) |
| hsa_colocalization_hsapiens_ensgene_go_final | hsa | SCL | WMI | 0...0.7 | Gene Ontology (cellular compartment) (GO) |
| hsa_mirna_cotarget_mirbase_mirna_2_target_human | hsa | MIR | miRNA score | 0...2.5 | miRBase targets, v.17 (MicroCosm) |
| hsa_pearson_hsap_gse26440_derivation_of_septic_shock | hsa | MEX | PLC | -1...1 | Derivation of septic shock subgroups (Wong et al.,2009) |
| hsa_pearson_hsap_gse29288_9_different_cancer_tissues | hsa | MEX | PLC | -1...1 | 9 different cancer tissues (Reinhold WC et al.,2011) |
| hsa_ppi_intact_hsa_2011 | hsa | PPI | PPI score | 0...1 | IntAct (Aranda et al., 2010) |
| hsa_tf_cotarget_eel_mpromdb_tf_2_target_human | hsa | TFB | TF score | 0...10 | EEL: mammalian enhancers & MPromDb (Hallikas et al., 2006) |
| hsa_unidomint_unidomint_pfam | hsa | DOM | UniDomInt sum | 0.04...8.78 | Unification of domain-domain interactions (Bjorkholm&Sonnhammer, 2009) |
| mmu_colocalization_mmusculus_ensgene_go_final | mmu | SCL | WMI | 0...0.7 | Gene Ontology (cellular compartment) (GO) |
| mmu_mirna_cotarget_mirbase_mirna_2_target_mouse | mmu | MIR | miRNA score | 0...2.5 | miRBase targets, v.17 (MicroCosm) |
| mmu_pearson_mmus_gse10246_gnf_mouse_geneatlas_v3 | mmu | MEX | PLC | -1...1 | GNF Mouse GeneAtlas v.3 (Lattin JE et al.,2011) |
| mmu_pearson_mmus_gse29685_coexpression_of_normally_incompatibl | mmu | MEX | PLC | -1...1 | Incompatible developmental pathways in retinoblastoma (McEvoy et al.,2011) |
| mmu_pearson_mmus_gse7404_longitudinal_leukocyte_gene_expressio | mmu | MEX | PLC | -1...1 | Comparison of Longitudinal Leukocyte Gene Expression (Lederer et al., 2011) |
| mmu_ppi_intact_mmu_2011 | mmu | PPI | PPI score | 0...1 | IntAct (Aranda et al., 2010) |
| mmu_unidomint_unidomint_pfam | mmu | DOM | UniDomInt sum | 0.04...8.78 | Unification of domain-domain interactions (Bjorkholm&Sonnhammer, 2009) |
| rno_colocalization_rnorwegicus_ensgene_go_final | rno | SCL | WMI | 0...0.7 | Gene Ontology (cellular compartment) (GO) |
| rno_mirna_cotarget_mirbase_mirna_2_target_rat | rno | MIR | miRNA score | 0...2.5 | miRBase targets, v.17 (MicroCosm) |
| rno_pearson_rnor_gse23093_genes_vasculature_function_sensitivi | rno | MEX | PLC | -1...1 | Meninges and Associated Vasculature Function (Thomas, 2010) |
| rno_pearson_rnor_gse4776_thrivikraman_5p50mh058922_050002 | rno | MEX | PLC | -1...1 | Brain chemistry (Thrivikraman, 2011) |
| rno_ppi_intact_rno_2011 | rno | PPI | PPI score | 0...1 | IntAct (Aranda et al., 2010) |
| rno_unidomint_unidomint_pfam | rno | DOM | UniDomInt sum | 0.04...8.78 | Unification of domain-domain interactions (Bjorkholm&Sonnhammer, 2009) |
| sce_colocalization_scereviciae_orf_go_final | sce | SCL | WMI | 0...0.7 | Gene Ontology (cellular compartment) (GO) |
| sce_pearson_gasch_filtered | sce | MEX | PLC | -1...1 | Expression in environmental changes (Gasch et al., 2000) |
| sce_pearson_scer_gse11452_chemostat_steady_state_microarray_co | sce | MEX | PLC | -1...1 | Steady-state chemostat cultures (Knijnenburg et al., 2011) |
| sce_pearson_scer_gse19116_xylose_utilization_timecourse | sce | MEX | PLC | -1...1 | Xylose utilization timecourse (Wenger JW, Schwartz K, Sherlock G.,2010) |
| sce_pearson_scer_gse5499_identifying_transcription_factor_func | sce | MEX | PLC | -1...1 | Identifying transcription factor functions (Chua et al.,2006) |
| sce_pearson_scer_gse8561_mutant2 | sce | MEX | PLC | -1...1 | Deletion-mutant strains (Aragon et al.) |
| sce_ppi_intact_sce_2011 | sce | PPI | PPI score | 0...1 | IntAct (Aranda et al., 2010) |
| sce_tf_cotarget_regulogs_tf_2_target_yeast | sce | TFB | TF score | 0...10 | protein-DNA regulogs (Yu et al., 2004) |
| sce_geni_simple_sgadata_correlations | sce | GIN | PLC | -1...1 | synthetic lethality assay (Costanzo et al., 2010) |
| sce_unidomint_unidomint_pfam | sce | DOM | UniDomInt sum | 0.04...8.78 | Unification of domain-domain interactions (Bjorkholm&Sonnhammer, 2009) |