If you use FunCoup in your research, please cite:

• "Comparative interactomics with Funcoup 2.0", Andrey Alexeyenko, Thomas Schmitt, Andreas Tjärnberg, Dmitri Guala, Oliver Frings, Erik L.L. Sonnhammer, Nucleic Acids Research, 40:D821-D828 (2012)
• "Global networks of functional coupling in eukaryotes from comprehensive data integration", Andrey Alexeyenko and Erik L.L. Sonnhammer, Genome Research, 19:1107-1116 (2009)

Other publications pertaining to FunCoup:

• "Network-based identification of novel cancer genes", Gabriel Östlund, Mats Lindskog, and Erik L.L. Sonnhammer, Molecular and Cellular Proteomics, 9:648-655 (2010)
• "Dynamic Zebrafish Interactome Reveals Transcriptional Mechanisms of Dioxin Toxicity", Andrey Alexeyenko, Deena M Wassenberg, Edward K Lobenhofer, Jerry Yen, Elwood Linney, Erik LL Sonnhammer, Joel N Meyer, PloS ONE, 5:e10465 (2010)